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[176182_s_at]

Description Y48G1BM.E /REP_DB=WormBase Gene ID /WP=CE26116 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 0      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 17.9
(3)
A 		3.3
(-3)
A 		3.6
(-2.9)
A 		4.2
(-2.6)
A 		15
B 4.9
(0.5)
A 		2.2
(-2.1)
A 		1.3
(-3)
A 		7.5
(3)
A 		6
C 13.1
(-2)
A 		3.6
(-2.8)
A 		1.3
(-3)
A 		74.8
(3)
A 		74
avr 12
(-0.8) 		3
(-2.8) 		2.1
(-3) 		28.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.2
(-2.1)
A 		31.4
(3)
A 		3.8
(-2.9)
A 		3.1
(-3)
A 		6.5
(-2.3)
A 		3.5
(-2.9)
A 		28
B 4
(-2.6)
A 		17.7
(0.6)
A 		2.2
(-3)
A 		27.8
(3)
A 		3.5
(-2.7)
A 		13.9
(-0.3)
A 		26
C 3.8
(-2.9)
A 		6.9
(-1.4)
A 		16.4
(3)
A 		3.5
(-3)
A 		7.7
(-1)
A 		5.5
(-2.1)
A 		13
avr 5
(-3) 		18.7
(3) 		7.5
(-1.9) 		11.5
(-0.2) 		5.9
(-2.6) 		7.6
(-1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.5
(3)
A 		0.7
(-2.9)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		6
B 1.6
(3)
A 		0.6
(-1.6)
A 		0.3
(-3)
A 		1.6
(3)
A 		1
C 4.3
(-1.1)
A 		1
(-2.7)
A 		0.4
(-3)
A 		12.6
(3)
A 		12
avr 4.1
(1.9) 		0.8
(-2.6) 		0.5
(-3) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		11.2
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		2
(-2.3)
A 		0.9
(-2.9)
A 		10
B 1.4
(-2.2)
A 		5.9
(1.7)
A 		0.5
(-3)
A 		7.4
(3)
A 		1.4
(-2.2)
A 		5.2
(1.1)
A 		7
C 1.4
(-1.8)
A 		2.1
(-0.6)
A 		4.2
(3)
A 		0.7
(-3)
A 		2.5
(0.1)
A 		1.9
(-0.9)
A 		4
avr 1.4
(-3) 		6.4
(3) 		1.8
(-2.5) 		3
(-1.1) 		2
(-2.3) 		2.7
(-1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176182_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18874
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.E NCBI
Target Description Y48G1BM.E /REP_DB=WormBase Gene ID /WP=CE26116 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067869(11), NM_058301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067869 NCBI Caenorhabditis elegans Y54G2A.21 (Y54G2A.21) mRNA, complete cds. 11/11 A 
NM_058301 NCBI Caenorhabditis elegans Y48G1BM.6 (Y48G1BM.6) mRNA, complete cds. 11/11 None
GENEFINDER00000014677 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:231691:239214:-1 10/11 None
SNAP00000014669 ENSEMBL cdna:SNAP chromosome:CEL140:I:233275:237248:-1 10/11 None
SNAP00000036504 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2909934:2912884:-1 11/11 None
GENEFINDER00000036596 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2909406:2912884:-1 11/11 None
Y48G1BM.6 ENSEMBL cdna:known chromosome:CEL140:I:235130:238252:-1 gene:Y48G1BM.6 11/11 None
Y54G2A.21 ENSEMBL cdna:known chromosome:CEL140:IV:2906435:2913810:-1 gene:Y54G2A.21 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031765 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19868787-19870090(+) 63.76 63.76
chrI:235129-238252(-) 100.0 100.0
chrIV:2911348-2913997(-) 83.9 83.9
Public Domain and Genome References
Gene Title

Ensembl Y48G1BM.6
Y54G2A.21
Entrez Gene 190039 Entrez gene
190282 Entrez gene
SwissProt Q965V0 EMBL-EBI
Q9N3B2 EMBL-EBI
WormBase CE26116 Wormbase
CE36896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 0.0
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast CAB04507 Hypothetical protein F57G4.2 [Caenorhabditis elegans] ref|NP_507459.1| F57G4.2 [Caenorhabditis elegans] 0.0
blast AAK68498 Hypothetical protein Y48G1BM.6 [Caenorhabditis elegans] ref|NP_490702.1| Y48G1BM.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 8.8E-110
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 8.8E-110
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176182_S_AT
atttcgcaaagctcttcacttgcttcaacacgaaatctgcctcgaggatgacgtcggaca
atttattcgaaaattcacaaaattcctgaattcagaagagaatcaaagctacaaaaacaa
gctttcaaactttgaggccgttgactttttatcaaaatgcggattatctctaagtcagat
ggaaaaaatcaaaaactatttgactaatgccattggctatgatttgcttccatcggtaaa
gaacacaagagatttgtcaatccagttatcaatgatctccagtttcaaagtttccacttc
gttcgacaataaaggaaaagtgattaccattgtgcagtgcatgaaaattgcagaagtttt
agcctatcgaatagagcttctatgcaattcaaatcaatttgtggacgacggatacacgaa
aggagtaatcaagattggagtcgttggtgacgctggaggtggaagcacaaagttggcatt
ggtaatcggaaacgtatctcgaccgaattcttcgagacacgttatggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGCAAAGCTCTTCACTTGCTT 384 17 1248 Antisense
CAAAGCTCTTCACTTGCTTCAACAC 251 193 1254 Antisense
GCTTCAACACGAAATCTGCCTCGAG 361 305 1269 Antisense
ATCTGCCTCGAGGATGACGTCGGAC 454 31 1282 Antisense
GGATGACGTCGGACAATTTATTCGA 379 511 1293 Antisense
TCAAACTTTGAGGCCGTTGACTTTT 360 627 1372 Antisense
CAATTTGTGGACGACGGATACACGA 281 181 1642 Antisense
GGTGGAAGCACAAAGTTGGCATTGG 468 497 1705 Antisense
TGGCATTGGTAATCGGAAACGTATC 25 541 1721 Antisense
GAAACGTATCTCGACCGAATTCTTC 138 357 1736 Antisense
GAATTCTTCGAGACACGTTATGGTA 350 323 1752 Antisense
Sequence Source Affymetrix Proprietary Database