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[176181_s_at]

Description Y69A2AR.R /REP_DB=WormBase Gene ID /WP=CE26565 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 06      6grp_total > 32      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4692
1 2 3 4 range
A 11800.5
(3)
P 		8895.3
(-0.7)
P 		11770.7
(3)
P 		7108.7
(-3)
P 		4692
B 11782.4
(3)
P 		11024.9
(2)
P 		11430.3
(2.5)
P 		7355.5
(-3)
P 		4427
C 10859.8
(2.2)
P 		11383.8
(3)
P 		10400.7
(1.6)
P 		7251.7
(-3)
P 		4132
avr 11480.9
(3) 		10434.7
(1.5) 		11200.6
(2.6) 		7238.6
(-3) 		4242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5541
1 2 3 4 5 6 range
A 9276.9
(0.5)
P 		9924
(1.6)
P 		10706.2
(3)
P 		9187.1
(0.3)
P 		8428.4
(-1)
P 		7313.7
(-3)
P 		3393
B 9364.5
(2.1)
P 		8578.2
(1.1)
P 		10047.2
(3)
P 		9103
(1.8)
P 		7823.5
(0.2)
P 		5349.3
(-3)
P 		4698
C 10043.5
(2)
P 		8657.2
(0.3)
P 		10890
(3)
P 		9215.4
(1)
P 		9056.1
(0.8)
P 		5891.8
(-3)
P 		4998
avr 9561.6
(1.6) 		9053.1
(0.9) 		10547.8
(3) 		9168.5
(1.1) 		8436
(0.1) 		6184.9
(-3) 		4363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3256
1 2 3 4 range
A 4296.6
(3)
P 		1930.9
(-1.4)
P 		3077.1
(0.8)
P 		1040.6
(-3)
P 		3256
B 3757.3
(3)
P 		2722.9
(0.2)
P 		2648.7
(-0)
P 		1567.5
(-3)
P 		2190
C 3594.9
(2.9)
P 		3272.9
(2.1)
P 		3625
(3)
P 		1222.7
(-3)
P 		2402
avr 3882.9
(3) 		2642.2
(0.1) 		3116.9
(1.2) 		1276.9
(-3) 		2606

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2013
1 2 3 4 5 6 range
A 1710.1
(-3)
P 		3529.5
(3)
P 		2331.6
(-1)
P 		2330.1
(-1)
P 		2543.3
(-0.3)
P 		1780.7
(-2.8)
P 		1819
B 3258.4
(3)
P 		2855.3
(1.1)
P 		2439.8
(-0.9)
P 		2411.1
(-1)
P 		3178.6
(2.6)
P 		1994.7
(-3)
P 		1264
C 3722.7
(3)
P 		2641.6
(-0.5)
P 		2771.7
(-0.1)
P 		1853.2
(-3)
P 		2930.4
(0.5)
P 		1972.3
(-2.6)
P 		1870
avr 2897.1
(2.4) 		3008.8
(3) 		2514.4
(0.3) 		2198.1
(-1.5) 		2884.1
(2.3) 		1915.9
(-3) 		1093
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176181_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19126
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.R NCBI
Target Description Y69A2AR.R /REP_DB=WormBase Gene ID /WP=CE26565 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067813(11), NM_067812(10), NM_182293(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067813 NCBI Caenorhabditis elegans Y69A2AR.18a (Y69A2AR.18) mRNA, complete cds. 11/11 None
NM_067812 NCBI Caenorhabditis elegans Y69A2AR.18b (Y69A2AR.18) mRNA, complete cds. 10/11 None
NM_182293 NCBI Caenorhabditis elegans Y69A2AR.18c (Y69A2AR.18) mRNA, complete cds. 9/11 None
SNAP00000018804 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2495747:2497415:1 11/11 None
GENEFINDER00000018832 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2495747:2497415:1 11/11 None
Y69A2AR.18a.3 ENSEMBL cdna:known chromosome:CEL140:IV:2495731:2497674:1 gene:Y69A2AR.18 11/11 None
Y69A2AR.18a.4 ENSEMBL cdna:known chromosome:CEL140:IV:2495731:2497674:1 gene:Y69A2AR.18 11/11 None
Y69A2AR.18a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2495740:2497674:1 gene:Y69A2AR.18 11/11 None
Y69A2AR.18a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2495743:2497674:1 gene:Y69A2AR.18 11/11 None
Y69A2AR.18b ENSEMBL cdna:known chromosome:CEL140:IV:2495747:2497590:1 gene:Y69A2AR.18 10/11 None
Y69A2AR.18c ENSEMBL cdna:known chromosome:CEL140:IV:2495747:2497566:1 gene:Y69A2AR.18 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2488853-2497421(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y69A2AR.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00872 Hypothetical protein Y69A2AR.18b [Caenorhabditis elegans] ref|NP_500213.1| Y69A2AR.18b [Caenorhabditis elegans] 1.0E-164
blast AAK68562 Hypothetical protein Y69A2AR.18a [Caenorhabditis elegans] ref|NP_500214.1| Y69A2AR.18a [Caenorhabditis elegans] 1.0E-152
blast CAE74688 Hypothetical protein CBG22500 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR000131 EMBL-EBI H+-transporting two-sector ATPase, gamma subunit 4.7E-99
Pfam IPR000131 EMBL-EBI H+-transporting two-sector ATPase, gamma subunit 4.3E-61
Pfam IPR000131 EMBL-EBI H+-transporting two-sector ATPase, gamma subunit 1.8E-44
Sequence
Target Sequence 
>C. ELEGANS:176181_S_AT
caagttttggtgctcattacctccgacagaggactttgcggtggagttcactcttccatc
gtcaaggaggccaagaacatcctcaacaacgccggagacaaggaaatccgcgttgtagcc
atcggagacaagtccagagccggacttcaacgtctttatgctaacagcattcttctctcc
ggaaacgagattggacgtgctccaccaagcttcgctgatgcttccatcgctgccaaggct
atcctcgactctggatatgactttgagactggaaccatcttgttcaaccgtttcaagacc
gtcgtctcgtacgaaacctcaaagctccaaattcttccattggaggcaatcaaggccaag
gaagccctcagcacgtacgattccgtcgacgatgacgttctccaatcgtattccgagtat
tcgctcgcccaattgatctactacggaatgaaggaatccgcaacctcagagcagagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTTTTGGTGCTCATTACCTCCG 580 183 3928 Antisense
GACTTTGCGGTGGAGTTCACTCTTC 452 371 3959 Antisense
TTCACTCTTCCATCGTCAAGGAGGC 285 687 3974 Antisense
AAGGAAATCCGCGTTGTAGCCATCG 182 159 4027 Antisense
CAGAGCCGGACTTCAACGTCTTTAT 501 185 4062 Antisense
TGTTCAACCGTTTCAAGACCGTCGT 68 561 4208 Antisense
TCTCGTACGAAACCTCAAAGCTCCA 537 609 4232 Antisense
GCACGTACGATTCCGTCGACGATGA 710 315 4298 Antisense
GATGACGTTCTCCAATCGTATTCCG 418 411 4318 Antisense
CTCGCCCAATTGATCTACTACGGAA 554 233 4351 Antisense
AATCCGCAACCTCAGAGCAGAGCTC 86 167 4382 Antisense
Sequence Source Affymetrix Proprietary Database