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[176180_s_at]

Description K07D4.7A /REP_DB=WormBase Gene ID /WP=CE25936 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 20      6grp_total > 29      4grp_total > 19      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 125.7
(-1.9)
P 		189.6
(-0.1)
P 		89.2
(-3)
A 		293.7
(3)
P 		205
B 138.4
(-2.6)
P 		145.4
(-2.2)
A 		129.5
(-3)
P 		251.8
(3)
P 		122
C 171.3
(2.7)
P 		124.7
(-0)
P 		73.9
(-3)
P 		175.9
(3)
P 		102
avr 145.1
(-1) 		153.2
(-0.7) 		97.5
(-3) 		240.5
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 159.7
(-1.2)
P 		261.7
(3)
P 		117.6
(-3)
P 		181.9
(-0.3)
A 		226.5
(1.5)
P 		145.5
(-1.8)
P 		144
B 264.1
(3)
P 		187.6
(0.1)
P 		107.5
(-3)
P 		110.4
(-2.9)
P 		248.7
(2.4)
P 		133.5
(-2)
P 		157
C 238
(1.6)
P 		184.2
(-0.5)
P 		126.1
(-2.8)
P 		121.9
(-3)
M 		273
(3)
P 		122.8
(-3)
P 		151
avr 220.6
(1.7) 		211.2
(1.3) 		117.1
(-3) 		138.1
(-2) 		249.4
(3) 		133.9
(-2.2) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 45.8
(3)
P 		41.2
(1.8)
P 		23.3
(-3)
A 		43
(2.3)
P 		23
B 44.1
(0.6)
P 		35.9
(-1.5)
A 		30
(-3)
P 		53.7
(3)
P 		24
C 56.7
(3)
P 		35.9
(-1)
P 		25.8
(-3)
P 		29.7
(-2.2)
P 		31
avr 48.9
(3) 		37.7
(0) 		26.4
(-3) 		42.1
(1.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 29.4
(-2.7)
P 		93.1
(3)
P 		25.6
(-3)
P 		46.1
(-1.2)
A 		68.3
(0.8)
P 		35.4
(-2.1)
P 		68
B 91.9
(2.3)
P 		62.4
(-0.1)
P 		26.1
(-3)
P 		29.2
(-2.8)
P 		101.1
(3)
P 		49.8
(-1.1)
P 		75
C 88.2
(3)
P 		56.2
(-0)
P 		32.1
(-2.3)
P 		24.5
(-3)
M 		88.3
(3)
P 		41.1
(-1.4)
P 		64
avr 69.8
(1.3) 		70.6
(1.4) 		27.9
(-3) 		33.3
(-2.4) 		85.9
(3) 		42.1
(-1.5) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176180_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5414
Sequence Type Exemplar sequence
Representative Public ID K07D4.7A NCBI
Target Description K07D4.7A /REP_DB=WormBase Gene ID /WP=CE25936 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062305(11), NM_062306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062305 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-218) (tag-218) mRNA, complete cds. 11/11 None
NM_062306 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-218) (tag-218) mRNA, complete cds. 11/11 None
SNAP00000021595 ENSEMBL cdna:SNAP chromosome:CEL140:II:4007094:4015763:1 11/11 None
GENEFINDER00000021612 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4009638:4015763:1 11/11 None
K07D4.7a ENSEMBL cdna:known chromosome:CEL140:II:4004883:4016009:1 gene:K07D4.7 11/11 None
K07D4.7b ENSEMBL cdna:known chromosome:CEL140:II:4011774:4015763:1 gene:K07D4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4004975-4015762(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07D4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71375 Temporarily assigned gene name protein 218, isoform a [Caenorhabditis elegans] ref|NP_494706.1| Temporarily Assigned Gene name family member (tag-218) [Caenorhabditis elegans] 0.0
blast CAE56301 Hypothetical protein CBG23957 [Caenorhabditis briggsae] 0.0
blast AAC26284 Temporarily assigned gene name protein 218, isoform b [Caenorhabditis elegans] ref|NP_494707.1| Temporarily Assigned Gene name family member (tag-218) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 7.4E-11
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.2E-7
Pfam IPR000219 EMBL-EBI DH domain 1.9E-18
Pfam IPR001452 EMBL-EBI SH3 7.4E-11
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.2E-7
Pfam IPR000219 EMBL-EBI DH domain 1.9E-18
Pfam IPR001452 EMBL-EBI SH3 7.4E-11
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.2E-7
Pfam IPR000219 EMBL-EBI DH domain 1.9E-18
Pfam IPR001452 EMBL-EBI SH3 7.4E-11
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.2E-7
Pfam IPR000219 EMBL-EBI DH domain 1.9E-18
Sequence
Target Sequence 
>C. ELEGANS:176180_S_AT
gtttgcaaagactacgcggctcgacggttcgtcgacatgcagcccattgagccggataac
ccgaaaattccactgggagctactagtaatttggtgggcagaccacatttgttcctgtgt
actctgatgagaaacgcgagggataagcagacggagctcctgttgtcagctgatagtgag
actgatcgggagagatggctcagtgcggtcaggccgcctacgtctactaacccggaggaa
aagatctacgccgaatgggactgcccgcaggcactagtggtgcatgcctaccaaccatca
caagccgatgagctgcagctgaacattggagactcgctgaacattttgcgaaagatgccc
gatggatggttgtacggagagcgagctggcgacggactgggcggatggtttccgtcgtcg
tacgtgcaggcaatcatcaacgaccacacacgagctaacaactatcgacaacggctacgt
atcatacaggcagcgtcgggttggcacggaaacgcttctccttcgtcaactcggagtggg
gggatgcccctgatggaccgtttgcggcgaatgtcgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGCAAAGACTACGCGGCTCGAC 386 449 2806 Antisense
GCGGCTCGACGGTTCGTCGACATGC 601 291 2821 Antisense
ATAAGCAGACGGAGCTCCTGTTGTC 622 25 2948 Antisense
AGAGATGGCTCAGTGCGGTCAGGCC 516 67 2996 Antisense
AAGATCTACGCCGAATGGGACTGCC 162 155 3046 Antisense
GCACTAGTGGTGCATGCCTACCAAC 336 313 3076 Antisense
GTCGTCGTACGTGCAGGCAATCATC 30 473 3219 Antisense
TCATCAACGACCACACACGAGCTAA 62 621 3239 Antisense
TCATACAGGCAGCGTCGGGTTGGCA 369 599 3287 Antisense
CTTCTCCTTCGTCAACTCGGAGTGG 103 215 3320 Antisense
GACCGTTTGCGGCGAATGTCGAACC 368 379 3361 Antisense
Sequence Source Affymetrix Proprietary Database