[Home] | [Total List]

[176179_at]

Description Y38F2AR.F /REP_DB=WormBase Gene ID /WP=CE21631 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 80      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(-0.8)
A 		9.5
(3)
A 		2.1
(-3)
A 		4.8
(-0.8)
A 		7
B 1.6
(-3)
A 		2
(-2)
A 		4.1
(3)
A 		3.7
(2)
A 		3
C 2
(-2.8)
A 		3.3
(-2.3)
A 		1.5
(-3)
A 		17.9
(3)
A 		16
avr 2.8
(-2.8) 		4.9
(-0.8) 		2.6
(-3) 		8.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.1
(-1.5)
A 		2.3
(1.5)
A 		2.4
(3)
A 		2.1
(-1.5)
A 		2
(-3)
A 		2
(-3)
A 		0
B 1.7
(-2.5)
A 		1.6
(-2.6)
A 		2.1
(-2.1)
A 		6.9
(3)
A 		1.8
(-2.4)
A 		1.2
(-3)
A 		6
C 1.2
(-3)
A 		2.7
(-1.7)
A 		2.4
(-1.9)
A 		8
(3)
A 		3.7
(-0.8)
A 		1.6
(-2.6)
A 		7
avr 1.7
(-2.9) 		2.2
(-2.1) 		2.3
(-2) 		5.7
(3) 		2.5
(-1.7) 		1.6
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.8
(1.8)
A 		2.1
(3)
A 		0.6
(-3)
A 		0.7
(-2.6)
A 		2
B 0.5
(-3)
A 		0.5
(-3)
A 		0.9
(3)
A 		0.8
(1.5)
A 		0
C 0.7
(-2.5)
A 		1
(-1.8)
A 		0.5
(-3)
A 		3
(3)
A 		3
avr 1
(-0.8) 		1.2
(0.8) 		0.7
(-3) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.8
(3)
A 		0.5
(-1.5)
A 		0.5
(-1.5)
A 		0.6
(-0)
A 		0.5
(-1.5)
A 		0
B 0.6
(-2.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.8
(3)
A 		0.7
(-2.1)
A 		0.5
(-3)
A 		1
C 0.4
(-3)
A 		0.8
(-1)
A 		0.6
(-2)
A 		1.6
(3)
A 		1.2
(1)
A 		0.5
(-2.5)
A 		1
avr 0.5
(-3) 		0.7
(-1.5) 		0.5
(-3) 		1.3
(3) 		0.8
(-0.8) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19290
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.F NCBI
Target Description Y38F2AR.F /REP_DB=WormBase Gene ID /WP=CE21631 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y38F2AR.F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38F2AR.F Y38F2AR.F /REP_DB=WormBase Gene ID /WP=CE21631 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2375809-2378549(-) 84.64 100.0
Sequence
Target Sequence 
>C. ELEGANS:176179_AT
gccatcgccgtcgagttcgacaattatagttttttgggattttttcctgaaaaatcggtt
ttttttttggattttttaaaggaaaattatagttttttggaaaattatagtttttgggat
tttttcctgaaaaatcggacaattatagttttttgggatttttttcaggaaaatcgtttt
tttcctggaaaatttggattttttaattttttttctggagaacatagagtttctcgcgat
tttttattggaacatttcgatttttgggatttttttcaggaaaatttggattttttcaat
ttttatcgaaaaatttgtggatttcttttggttttttttcctagaaaatttcagtttttt
gcgaaaacgtgcagccgacaactaacgggtcgcgaaaatttttttccagaatttcgactc
gaaaacttactaaaaagacaacgtagcgtctttcttattagccaactcggtgacaacttc
aagagttcgacttcgggacacaagtccgtcagttcgaaggctttggagcacagattggag
cacggcaggcggaatttgatccaaaatcttctcgggttgtccagcattcatttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATCGCCGTCGAGTTCGACAATT 200 281 154 Antisense
GAGTTTCTCGCGATTTTTTATTGGA 302 397 380 Antisense
GCAGCCGACAACTAACGGGTCGCGA 133 313 524 Antisense
GTAGCGTCTTTCTTATTAGCCAACT 627 457 596 Antisense
GCCAACTCGGTGACAACTTCAAGAG 560 277 614 Antisense
TCGACTTCGGGACACAAGTCCGTCA 220 517 640 Antisense
AAGTCCGTCAGTTCGAAGGCTTTGG 681 153 655 Antisense
GAGCACAGATTGGAGCACGGCAGGC 191 389 679 Antisense
GAGCACGGCAGGCGGAATTTGATCC 642 387 691 Antisense
GATCCAAAATCTTCTCGGGTTGTCC 533 415 711 Antisense
TCGGGTTGTCCAGCATTCATTTGAT 1 607 725 Antisense
Sequence Source Affymetrix Proprietary Database