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[176178_at]

Description Y69A2AR.I /REP_DB=WormBase Gene ID /WP=CE22797 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 70      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 13
(-1.8)
A 		17.1
(-1.2)
A 		5
(-3)
A 		45.3
(3)
M 		40
B 5
(-3)
A 		56.6
(3)
P 		19.6
(-1.3)
A 		48.3
(2)
P 		52
C 26
(-0.5)
A 		35.5
(2)
M 		16.4
(-3)
P 		39.4
(3)
A 		23
avr 14.7
(-2.8) 		36.4
(1.5) 		13.7
(-3) 		44.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 25.1
(1)
A 		7.1
(-2)
A 		36.7
(3)
M 		20
(0.2)
A 		1.3
(-3)
A 		25.3
(1.1)
A 		35
B 13.9
(-1.9)
A 		27.8
(1.3)
A 		20.9
(-0.3)
A 		35.3
(3)
A 		13.8
(-1.9)
A 		9.1
(-3)
A 		26
C 21.3
(-1.3)
A 		41.4
(1.9)
P 		10.6
(-3)
A 		48.7
(3)
M 		32.4
(0.4)
P 		17.2
(-2)
A 		38
avr 20.1
(-1.6) 		25.4
(0) 		22.7
(-0.8) 		34.7
(3) 		15.8
(-3) 		17.2
(-2.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.7
(0.8)
A 		3.7
(-0.3)
A 		1.3
(-3)
A 		6.6
(3)
M 		5
B 1.6
(-3)
A 		14
(3)
P 		4.5
(-1.6)
A 		10.3
(1.2)
P 		12
C 8.6
(0.9)
A 		10.2
(3)
M 		5.7
(-3)
P 		6.6
(-1.8)
A 		5
avr 5
(-1.7) 		9.3
(3) 		3.8
(-3) 		7.8
(1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.6
(0.3)
A 		2.5
(-1.3)
A 		8
(3)
M 		5.1
(0.7)
A 		0.4
(-3)
A 		6.2
(1.6)
A 		8
B 4.8
(-1.6)
A 		9.2
(2.9)
A 		5.1
(-1.3)
A 		9.3
(3)
A 		5.6
(-0.8)
A 		3.4
(-3)
A 		6
C 7.9
(0.2)
A 		12.6
(3)
P 		2.7
(-3)
A 		9.8
(1.3)
M 		10.5
(1.7)
P 		5.8
(-1.1)
A 		10
avr 5.8
(-1.6) 		8.1
(3) 		5.3
(-2.6) 		8.1
(3) 		5.5
(-2.2) 		5.1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19123
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.I NCBI
Target Description Y69A2AR.I /REP_DB=WormBase Gene ID /WP=CE22797 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y69A2AR.I
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y69A2AR.I Y69A2AR.I /REP_DB=WormBase Gene ID /WP=CE22797 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2571160-2571439(-) 100.0 100.0
chrIV:2556023-2556312(-) 92.47 92.47
Sequence
Target Sequence 
>C. ELEGANS:176178_AT
ccttcttacgatttctccagcagaagaagaagagcactgcaagagcacataccaccacca
aagcagcaactcctccaatgattcctgctgttgatgatgttgacgttgctggagctgacg
tggacgtctgctggaatattgcaaaattattgatttttataggaaatcattggacacttc
aaataacgtgtttatctcaagaattatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCTTACGATTTCTCCAGCAGAA 534 269 29 Antisense
TTACGATTTCTCCAGCAGAAGAAGA 558 681 34 Antisense
GAAGAGCACTGCAAGAGCACATACC 307 339 57 Antisense
GCACTGCAAGAGCACATACCACCAC 535 315 62 Antisense
TCCAATGATTCCTGCTGTTGATGAT 461 587 102 Antisense
TGTTGATGATGTTGACGTTGCTGGA 316 563 117 Antisense
CGTTGCTGGAGCTGACGTGGACGTC 148 245 132 Antisense
TGGAGCTGACGTGGACGTCTGCTGG 242 549 138 Antisense
TATAGGAAATCATTGGACACTTCAA 228 659 186 Antisense
GGACACTTCAAATAACGTGTTTATC 396 517 200 Antisense
AACGTGTTTATCTCAAGAATTATCG 492 143 213 Antisense
Sequence Source Affymetrix Proprietary Database