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[176176_s_at]

Description Y119C1B.J /REP_DB=WormBase Gene ID /WP=CE25220 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 78      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 23.7
(-3)
A 		39.6
(0.7)
A 		33.6
(-0.7)
A 		49.5
(3)
A 		26
B 39.7
(3)
A 		8.6
(-3)
A 		29.1
(1)
A 		21.5
(-0.5)
A 		31
C 50.8
(-0.6)
A 		70.2
(0.7)
P 		13.7
(-3)
A 		105.2
(3)
P 		92
avr 38.1
(-0.7) 		39.5
(-0.5) 		25.5
(-3) 		58.7
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 68.9
(-0.7)
M 		31.8
(-2.1)
A 		44.6
(-1.6)
A 		7
(-3)
A 		66.9
(-0.8)
P 		170.8
(3)
P 		164
B 64
(0)
A 		24.8
(-2.8)
A 		22
(-3)
A 		35.4
(-2)
A 		46.5
(-1.2)
P 		104.7
(3)
P 		83
C 35.9
(-1.7)
P 		39.7
(-1.5)
A 		8
(-3)
A 		67.5
(-0.2)
A 		133.8
(3)
P 		107.9
(1.8)
P 		126
avr 56.3
(-1.2) 		32.1
(-2.6) 		24.9
(-3) 		36.6
(-2.3) 		82.4
(0.4) 		127.8
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.6
(2.3)
A 		8.6
(2.3)
A 		8.8
(3)
A 		7.2
(-3)
A 		2
B 12.7
(3)
A 		2.1
(-3)
A 		6.8
(-0.3)
A 		4.6
(-1.6)
A 		11
C 16.8
(1.7)
A 		20.2
(3)
P 		4.8
(-3)
A 		17.7
(2)
P 		15
avr 12.7
(3) 		10.3
(0.6) 		6.8
(-3) 		9.8
(0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12.7
(-1.4)
M 		11.3
(-1.6)
A 		9.7
(-1.8)
A 		1.8
(-3)
A 		20.2
(-0.2)
P 		41.6
(3)
P 		40
B 22.3
(0)
A 		8.2
(-2.5)
A 		5.3
(-3)
A 		9.4
(-2.3)
A 		18.9
(-0.6)
P 		39
(3)
P 		34
C 13.3
(-1.4)
P 		12.1
(-1.5)
A 		2
(-3)
A 		13.6
(-1.3)
A 		43.3
(3)
P 		36.1
(2)
P 		41
avr 16.1
(-1.1) 		10.5
(-2.1) 		5.7
(-3) 		8.3
(-2.5) 		27.5
(0.9) 		38.9
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176176_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18794
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.J NCBI
Target Description Y119C1B.J /REP_DB=WormBase Gene ID /WP=CE25220 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058987 NCBI Caenorhabditis elegans Y119C1B.1 (Y119C1B.1) mRNA, complete cds. 11/11 A 
Y119C1B.1 ENSEMBL cdna:known chromosome:CEL140:I:4554151:4555204:1 gene:Y119C1B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012129 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4553958-4555245(+) 96.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1B.1
Entrez Gene 172056 Entrez gene
SwissProt Q95Y76 EMBL-EBI
WormBase CE29607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39322 Hypothetical protein Y119C1B.1 [Caenorhabditis elegans] ref|NP_491388.1| Y119C1B.1 [Caenorhabditis elegans] 2.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491388.1 1 15-32
Y119C1B.1 1 15-32
Sequence
Target Sequence 
>C. ELEGANS:176176_S_AT
ggacaatccacgtattccaagccaagtaagcccgagaacgacaaatcatattattcggtc
ccttcaaaagataaatccacgtcgaaaaagcagaagatgttgagaagtgatatggcggat
tctgcttctccgaagagcttgaaaaagatcaagagttcgaaagatccattgagatcttct
tcaagaaagactacaaaaccgagtaagaagttgtctgggagatcttcgaagaagaacttg
gcgtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAATCCACGTATTCCAAGCCAA 181 527 589 Antisense
GTATTCCAAGCCAAGTAAGCCCGAG 77 427 600 Antisense
AAGCCAAGTAAGCCCGAGAACGACA 202 147 607 Antisense
AAGCCCGAGAACGACAAATCATATT 658 147 616 Antisense
AAATCATATTATTCGGTCCCTTCAA 588 117 631 Antisense
TATTATTCGGTCCCTTCAAAAGATA 445 663 637 Antisense
GTGATATGGCGGATTCTGCTTCTCC 204 485 695 Antisense
GATTCTGCTTCTCCGAAGAGCTTGA 468 431 706 Antisense
AAGAGTTCGAAAGATCCATTGAGAT 539 153 739 Antisense
AAGTTGTCTGGGAGATCTTCGAAGA 93 155 796 Antisense
TCTTCGAAGAAGAACTTGGCGTCTA 60 617 811 Antisense
Sequence Source Affymetrix Proprietary Database