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[176175_at]

Description Y119C1B.J /REP_DB=WormBase Gene ID /WP=CE25220 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 76      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 12.8
(3)
A 		3.1
(-3)
A 		5
(-1.8)
A 		11.7
(2.3)
A 		10
B 9.7
(-2.1)
A 		20.7
(-0.3)
A 		4.1
(-3)
A 		40.5
(3)
A 		36
C 4.5
(-3)
A 		12.7
(-0.7)
A 		4.9
(-2.9)
A 		25.8
(3)
A 		21
avr 9
(-1.8) 		12.2
(-0.9) 		4.7
(-3) 		26
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 6.9
(-2.9)
A 		6.2
(-3)
A 		17.5
(-1.9)
A 		23.6
(-1.3)
A 		7.3
(-2.9)
A 		69.4
(3)
A 		63
B 18.5
(-1.6)
A 		4.8
(-3)
A 		7.5
(-2.7)
A 		7.5
(-2.7)
A 		28.4
(-0.6)
A 		62.8
(3)
A 		58
C 17.9
(-1.3)
A 		3.6
(-3)
A 		52.9
(3)
A 		30.2
(0.2)
A 		51.1
(2.8)
A 		45.7
(2.1)
A 		49
avr 14.4
(-2) 		4.9
(-3) 		26
(-0.7) 		20.4
(-1.3) 		28.9
(-0.4) 		59.3
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.7
(3)
A 		0.7
(-3)
A 		1.3
(-2.1)
A 		1.7
(-1.5)
A 		4
B 3.1
(-1.3)
A 		5.1
(0.3)
A 		0.9
(-3)
A 		8.6
(3)
A 		8
C 1.5
(-3)
A 		3.7
(1.7)
A 		1.7
(-2.6)
A 		4.3
(3)
A 		3
avr 3.1
(0) 		3.2
(0.2) 		1.3
(-3) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.2
(-2.7)
A 		3.8
(-2)
A 		6
(-1.2)
A 		2.2
(-2.7)
A 		16.9
(3)
A 		16
B 6.4
(-1.7)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		2
(-2.9)
A 		11.5
(-0.3)
A 		23.4
(3)
A 		22
C 6.6
(-0.9)
A 		1.1
(-3)
A 		13.5
(1.8)
A 		6.1
(-1.1)
A 		16.5
(3)
A 		15.3
(2.5)
A 		15
avr 4.8
(-1.9) 		1.6
(-3) 		6.4
(-1.3) 		4.7
(-1.9) 		10.1
(0) 		18.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18794
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.J NCBI
Target Description Y119C1B.J /REP_DB=WormBase Gene ID /WP=CE25220 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058987(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058987 NCBI Caenorhabditis elegans Y119C1B.1 (Y119C1B.1) mRNA, complete cds. 10/11 A 
SNAP00000012129 ENSEMBL cdna:SNAP chromosome:CEL140:I:4554151:4556576:1 10/11 None
Y119C1B.1 ENSEMBL cdna:known chromosome:CEL140:I:4554151:4555204:1 gene:Y119C1B.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4553958-4555245(+) 96.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1B.1
Entrez Gene 172056 Entrez gene
SwissProt Q95Y76 EMBL-EBI
WormBase CE29607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39322 Hypothetical protein Y119C1B.1 [Caenorhabditis elegans] ref|NP_491388.1| Y119C1B.1 [Caenorhabditis elegans] 2.0E-38
blast AAK39322 Hypothetical protein Y119C1B.1 [Caenorhabditis elegans] ref|NP_491388.1| Y119C1B.1 [Caenorhabditis elegans] 9.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491388.1 1 15-32
Y119C1B.1 1 15-32
SNAP00000012129 1 15-32
Sequence
Target Sequence 
>C. ELEGANS:176175_AT
gggatcggaagagtcgtcggagttccaaggatcggaaaagccatcggagctcgaatcgga
agagagacagagaagatgatgtgagagacggttcacggaagggagttagagatggaagaa
gtcggaagtctggcaagtctcgaaaatctcaaaaatctcaaaaatctacaaaacttgaga
aaaagaagtgctcgatccgctccgaggacatcaaaactccacggcatgacagcgagtacc
gtccaactaatgaagttcggtcggtgtacgtggcaactggacaatccacgtattccaagc
caagtaagcccgagaacgacaaatcatattattcggtcccttcaaaagataaatccacgt
cgaaaaagcagaagatgttgagaagtgatatggcggattctgcttctccgaagagcttga
aaaagatcaagagttcgaaagatccattgagatcttcttcaagaaagactacaaaaccga
gtaagaagttgtctgggagatcttcgaagaagaacttggcgtctaaaaaatcaaaaaaga
ggtttatccatgtgctgactctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATCGGAAGAGTCGTCGGAGTTC 128 497 311 Antisense
GGATCGGAAAAGCCATCGGAGCTCG 359 511 339 Antisense
AGCCATCGGAGCTCGAATCGGAAGA 133 85 349 Antisense
GAGAGACGGTTCACGGAAGGGAGTT 502 355 393 Antisense
GAAGTCGGAAGTCTGGCAAGTCTCG 444 335 428 Antisense
GTCTGGCAAGTCTCGAAAATCTCAA 100 471 438 Antisense
TCGATCCGCTCCGAGGACATCAAAA 317 603 502 Antisense
GGACATCAAAACTCCACGGCATGAC 411 525 516 Antisense
CATGACAGCGAGTACCGTCCAACTA 298 205 535 Antisense
TGAAGTTCGGTCGGTGTACGTGGCA 686 565 561 Antisense
GAGGTTTATCCATGTGCTGACTCTC 443 401 849 Antisense
Sequence Source Affymetrix Proprietary Database