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[176173_at]

Description Y119C1B.I /REP_DB=WormBase Gene ID /WP=CE25219 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 22      4grp_total > 37      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 93.4
(2.3)
A 		96.9
(3)
A 		83.1
(0.4)
A 		64.9
(-3)
A 		32
B 103.8
(3)
A 		64.1
(0.5)
A 		8.2
(-3)
A 		58.3
(0.1)
A 		96
C 140.3
(3)
A 		99
(-0.2)
A 		62.2
(-3)
A 		110.2
(0.7)
A 		78
avr 112.5
(3) 		86.7
(0.5) 		51.2
(-3) 		77.8
(-0.4) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 12.4
(-2.7)
A 		79.2
(3)
A 		65
(1.8)
M 		50.8
(0.6)
A 		9
(-3)
A 		12.9
(-2.7)
A 		70
B 86.2
(2.5)
A 		93.8
(3)
A 		92
(2.9)
A 		76.4
(1.7)
A 		28.3
(-1.7)
A 		10.8
(-3)
A 		83
C 89
(2.8)
A 		90.7
(3)
P 		81.9
(2.2)
A 		24.4
(-3)
A 		39.5
(-1.6)
A 		38.8
(-1.7)
A 		66
avr 62.5
(0.7) 		87.9
(3) 		79.6
(2.3) 		50.5
(-0.3) 		25.6
(-2.6) 		20.8
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 34
(3)
A 		21
(-0.2)
A 		21.7
(-0)
A 		9.5
(-3)
A 		25
B 33.1
(3)
A 		15.8
(-0.3)
A 		1.9
(-3)
A 		12.4
(-1)
A 		31
C 46.4
(3)
A 		28.5
(-0.9)
A 		21.7
(-2.3)
A 		18.6
(-3)
A 		28
avr 37.8
(3) 		21.8
(-1) 		15.1
(-2.6) 		13.5
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2.3
(-3)
A 		28.2
(3)
A 		14.2
(-0.2)
M 		12.9
(-0.5)
A 		2.7
(-2.9)
A 		3.1
(-2.8)
A 		26
B 30
(2.7)
A 		31.2
(3)
A 		22.3
(1)
A 		20.2
(0.6)
A 		11.5
(-1.3)
A 		4
(-3)
A 		27
C 33
(3)
A 		27.7
(1.9)
P 		20.8
(0.4)
A 		4.9
(-3)
A 		12.8
(-1.3)
A 		13
(-1.3)
A 		28
avr 21.8
(1.1) 		29
(3) 		19.1
(0.3) 		12.7
(-1.4) 		9
(-2.4) 		6.7
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18788
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.I NCBI
Target Description Y119C1B.I /REP_DB=WormBase Gene ID /WP=CE25219 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058985
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012138 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4550479:4552702:1 None
NM_058985 NCBI Caenorhabditis elegans Y119C1B.3 (Y119C1B.3) mRNA, complete cds. None
Y119C1B.3 ENSEMBL cdna:known chromosome:CEL140:I:4550479:4552759:1 gene:Y119C1B.3 None
SNAP00000012127 ENSEMBL cdna:SNAP chromosome:CEL140:I:4550479:4552702:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4552511-4553665(+) 68.84 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1B.3
Entrez Gene 191027 Entrez gene
SwissProt Q65XY1 EMBL-EBI
WormBase CE37422 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20084.1.S1_AT similar to transmembrane protein 26 cfa
DROSOPHILA_2:1624016_AT dm
DROSGENOME1:150660_AT dm
CHICKEN:GGA.10035.1.S1_AT transmembrane protein 26 gga
U133_X3P:HS2.437172.1.S1_3P_S_AT transmembrane protein 26 hs
U133_X3P:HS2.437172.1.S1_3P_AT transmembrane protein 26 hs
HG-U133_PLUS_2:1555025_AT transmembrane protein 26 hs
HG-U95D:74354_AT transmembrane protein 26 hs
HG-U95AV2:33376_AT Transmembrane protein 26 hs
U133_X3P:G5031932_3P_AT Transmembrane protein 26 hs
U133_X3P:HS2.434422.1.S1_3P_S_AT Transmembrane protein 26 hs
U133_X3P:HS2.434422.1.S1_3P_AT Transmembrane protein 26 hs
U133_X3P:1560516_3P_AT Transmembrane protein 26 hs
HG-U133_PLUS_2:1560516_AT Transmembrane protein 26 hs
HG-U133_PLUS_2:1560517_S_AT Transmembrane protein 26 hs
HG-U133_PLUS_2:241109_AT Transmembrane protein 26 hs
HG-U133B:241109_AT Transmembrane protein 26 hs
HG-U95D:88493_AT Transmembrane protein 26 hs
U133_X3P:HS.196452.0.A1_3P_AT Transmembrane protein 26 hs
MG-U74CV2:167634_I_AT transmembrane protein 26 mm
MOE430B:1434583_AT transmembrane protein 26 mm
MOUSE430_2:1434583_AT transmembrane protein 26 mm
Protein Similarities
Method ID Description E-Value
blast AAU20838 Hypothetical protein Y119C1B.3 [Caenorhabditis elegans] ref|NP_491386.2| Y119C1B.3 [Caenorhabditis elegans] 0.0
blast AAU20838 Hypothetical protein Y119C1B.3 [Caenorhabditis elegans] ref|NP_491386.2| Y119C1B.3 [Caenorhabditis elegans] 1.0E-157
blast CAE74499 Hypothetical protein CBG22250 [Caenorhabditis briggsae] 1.0E-148
blast CAE74499 Hypothetical protein CBG22250 [Caenorhabditis briggsae] 1.0E-125
blast XP_796133 PREDICTED: similar to CG14238-PA [Strongylocentrotus purpuratus] 1.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491386.2 5 26-48,63-82,91-110,205-227,275-297
Y119C1B.3 5 26-48,63-82,91-110,205-227,275-297
SNAP00000012127 5 26-48,63-82,91-110,172-194,242-264
GENEFINDER00000012138 5 26-48,63-82,91-110,205-227,275-297
Sequence
Target Sequence 
>C. ELEGANS:176173_AT
tcaacgactccgacaagaacgccgaaacagagaagaagctcaaggattcggagcatttct
gatgaaagagaacaactttttccaaggcatcaccatggaagacgactggatcgacttgac
actttggaagaaacttaatttttattctttctttaattttttaaacattcaaattaaaaa
atcattaaaatcaaatgtgtttacttttaaaaatttcaaattcttcaaccaaaaaaactt
taaaacctggttgccggttgccgaaaagttgccggttgccaaaattttccgtgttcggca
acttcggcaattgccggttgccgaaatttttagggttcggaaacttcagcaattgccggt
tgccgaaaatctcggttgccgcacagccctggtagataggcgtcaaaacgccaagactac
tgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACGACTCCGACAAGAACGCCGA 106 631 66 Antisense
GAACGCCGAAACAGAGAAGAAGCTC 477 345 82 Antisense
TCAAGGATTCGGAGCATTTCTGATG 29 633 105 Antisense
GAACAACTTTTTCCAAGGCATCACC 611 351 135 Antisense
AAGGCATCACCATGGAAGACGACTG 645 159 149 Antisense
ACGACTGGATCGACTTGACACTTTG 639 91 167 Antisense
GGATCGACTTGACACTTTGGAAGAA 578 499 173 Antisense
TGCCGGTTGCCAAAATTTTCCGTGT 236 539 335 Antisense
TTTCCGTGTTCGGCAACTTCGGCAA 239 669 351 Antisense
CGCACAGCCCTGGTAGATAGGCGTC 307 253 445 Antisense
GCGTCAAAACGCCAAGACTACTGTG 659 289 465 Antisense
Sequence Source Affymetrix Proprietary Database