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[176172_at]

Description Y71H2AM.H /REP_DB=WormBase Gene ID /WP=CE22950 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 47      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 76.6
(1.5)
A 		57.8
(-3)
A 		60.2
(-2.4)
A 		82.7
(3)
P 		25
B 62.1
(-2.2)
A 		103.8
(0.6)
A 		51.1
(-3)
A 		138.6
(3)
P 		88
C 61.9
(-3)
A 		120
(-0.2)
A 		71
(-2.6)
A 		185
(3)
P 		123
avr 66.9
(-2.5) 		93.9
(-0.3) 		60.8
(-3) 		135.4
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 73.7
(0.6)
A 		51
(-0.7)
A 		54.8
(-0.5)
A 		13.2
(-3)
A 		16.4
(-2.8)
A 		113.2
(3)
A 		100
B 67
(3)
A 		31
(-1)
A 		32.5
(-0.8)
A 		13
(-3)
A 		54.5
(1.6)
A 		57.2
(1.9)
A 		54
C 41
(0.1)
A 		63.3
(3)
A 		34.4
(-0.7)
A 		16.9
(-3)
A 		34.3
(-0.8)
A 		53.9
(1.8)
A 		46
avr 60.6
(1.6) 		48.4
(0.4) 		40.6
(-0.4) 		14.4
(-3) 		35.1
(-0.9) 		74.8
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 27.9
(3)
A 		12.5
(-2.8)
A 		15.7
(-1.6)
A 		12.1
(-3)
P 		16
B 19.8
(-0.3)
A 		25.6
(1.7)
A 		11.8
(-3)
A 		29.5
(3)
P 		18
C 20.5
(-3)
A 		34.5
(3)
A 		24.8
(-1.2)
A 		31.2
(1.6)
P 		14
avr 22.7
(1.6) 		24.2
(2.9) 		17.4
(-3) 		24.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.6
(-0.5)
A 		18.1
(0.7)
A 		11.9
(-0.9)
A 		3.3
(-3)
A 		5
(-2.6)
A 		27.6
(3)
A 		24
B 23.3
(3)
A 		10.3
(-0.9)
A 		7.9
(-1.6)
A 		3.4
(-3)
A 		22.1
(2.6)
A 		21.3
(2.4)
A 		20
C 15.2
(1.5)
A 		19.3
(3)
A 		8.8
(-1)
A 		3.4
(-3)
A 		11.1
(-0.1)
A 		18
(2.5)
A 		16
avr 17.4
(1.4) 		15.9
(1) 		9.5
(-1.1) 		3.4
(-3) 		12.7
(-0) 		22.3
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18922
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.H NCBI
Target Description Y71H2AM.H /REP_DB=WormBase Gene ID /WP=CE22950 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065210(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065210 NCBI Caenorhabditis elegans Y71H2AM.15 (Y71H2AM.15) mRNA, complete cds. 10/11 A 
SNAP00000014443 ENSEMBL cdna:SNAP chromosome:CEL140:III:2747227:2756350:-1 10/11 None
GENEFINDER00000014459 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2747227:2756350:-1 11/11 None
Y71H2AM.15 ENSEMBL cdna:known chromosome:CEL140:III:2747120:2756350:-1 gene:Y71H2AM.15 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2754845-2756350(-) 68.27 100.0
Public Domain and Genome References
Ensembl Y71H2AM.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29981 Hypothetical protein Y71H2AM.15a [Caenorhabditis elegans] ref|NP_497611.1| Y71H2AM.15 [Caenorhabditis elegans] 0.0
blast CAE64978 Hypothetical protein CBG09813 [Caenorhabditis briggsae] 0.0
blast ABA00158 Hypothetical protein Y71H2AM.15b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176172_AT
gaagcatcatccgatcatgctcacaggattcccgtgagttccatggcgatccgcgattcc
agcgtccagcctcagtggaccttcgacaaccacgacacccactcacgacacgaggaagat
cagcgacacctccagcgactcttcacggccacccatcccaaaataacaagccgccgaaaa
tgaagcgactagacaagtggattggcaatttacttagtgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCATCATCCGATCATGCTCACA 568 341 47 Antisense
ATCCGATCATGCTCACAGGATTCCC 689 37 55 Antisense
ACAGGATTCCCGTGAGTTCCATGGC 201 95 69 Antisense
CTCAGTGGACCTTCGACAACCACGA 441 229 117 Antisense
CACCCACTCACGACACGAGGAAGAT 273 201 142 Antisense
GAGGAAGATCAGCGACACCTCCAGC 562 403 158 Antisense
GGCCACCCATCCCAAAATAACAAGC 501 543 193 Antisense
CCATCCCAAAATAACAAGCCGCCGA 398 271 199 Antisense
CAAGCCGCCGAAAATGAAGCGACTA 600 185 213 Antisense
GAAGCGACTAGACAAGTGGATTGGC 670 343 228 Antisense
GGATTGGCAATTTACTTAGTGAACC 210 509 245 Antisense
Sequence Source Affymetrix Proprietary Database