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[176171_s_at]

Description Y119C1B.B /REP_DB=WormBase Gene ID /WP=CE25212 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 05      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 40.5
(-0.7)
A 		11.7
(-3)
A 		13.3
(-2.9)
A 		87.3
(3)
A 		76
B 33
(3)
A 		27.9
(1.7)
A 		17
(-1.1)
A 		9.5
(-3)
A 		24
C 47.1
(3)
A 		44.4
(2.6)
A 		26.8
(0.1)
A 		4.6
(-3)
A 		43
avr 40.2
(3) 		28
(-0.5) 		19
(-3) 		33.8
(1.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 117.1
(3)
A 		39.4
(-1.2)
A 		19
(-2.3)
A 		18.6
(-2.3)
A 		54.7
(-0.4)
A 		6
(-3)
A 		111
B 47.4
(1.2)
A 		63.1
(3)
A 		44.7
(0.9)
A 		10.1
(-3)
A 		35.8
(-0.1)
A 		16.1
(-2.3)
A 		53
C 22.6
(-1.9)
A 		87.2
(3)
A 		38.2
(-0.7)
A 		36.6
(-0.8)
A 		7.9
(-3)
A 		16.4
(-2.4)
A 		79
avr 62.4
(2.9) 		63.2
(3) 		34
(-0.5) 		21.8
(-1.9) 		32.8
(-0.6) 		12.8
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.8
(3)
A 		2.5
(-3)
A 		3.5
(-2.5)
A 		12.8
(2)
A 		12
B 10.5
(3)
A 		6.9
(0.5)
A 		3.9
(-1.7)
A 		2
(-3)
A 		9
C 15.6
(3)
A 		12.8
(1.9)
A 		9.4
(0.5)
A 		0.8
(-3)
A 		15
avr 13.6
(3) 		7.4
(-1.4) 		5.6
(-2.7) 		5.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 21.6
(3)
A 		14
(0.7)
A 		4.1
(-2.2)
A 		4.7
(-2)
A 		16.5
(1.5)
A 		1.5
(-3)
A 		20
B 16.5
(1.5)
A 		21
(3)
A 		10.8
(-0.3)
A 		2.7
(-3)
A 		14.5
(0.9)
A 		6
(-1.9)
A 		18
C 8.4
(-1.5)
A 		26.6
(3)
A 		9.7
(-1.2)
A 		7.4
(-1.8)
A 		2.5
(-3)
A 		5.5
(-2.3)
A 		24
avr 15.5
(1.1) 		20.5
(3) 		8.2
(-1.6) 		4.9
(-2.8) 		11.2
(-0.4) 		4.3
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176171_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18783
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.B NCBI
Target Description Y119C1B.B /REP_DB=WormBase Gene ID /WP=CE25212 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026549
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026549 NCBI Caenorhabditis elegans Y119C1B.11 (Y119C1B.11) mRNA, complete cds. None
SNAP00000012128 ENSEMBL cdna:SNAP chromosome:CEL140:I:4551186:4553122:-1 None
GENEFINDER00000012137 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4552833:4553122:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058985 11/11 Negative Strand Matching Probes None
SNAP00000012127 11/11 Negative Strand Matching Probes None
GENEFINDER00000012138 11/11 Negative Strand Matching Probes None
Y119C1B.3 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4551185-4553122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565394 Entrez gene
SwissProt Q4W5T2 EMBL-EBI
WormBase CE38737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55882 Hypothetical protein Y119C1B.11 [Caenorhabditis elegans] ref|NP_001021720.1| Y119C1B.11 [Caenorhabditis elegans] 5.0E-39
blast AAY55882 Hypothetical protein Y119C1B.11 [Caenorhabditis elegans] ref|NP_001021720.1| Y119C1B.11 [Caenorhabditis elegans] 2.0E-33
blast AAY55882 Hypothetical protein Y119C1B.11 [Caenorhabditis elegans] ref|NP_001021720.1| Y119C1B.11 [Caenorhabditis elegans] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:176171_S_AT
tccaaagtgtcaagtcgatccagtcgtcttccatggtgatgccttggaaaaagttgttct
ctttcatcagaaatgctccgaatccttgagcttcttctctgtttcggcgttcttgtcgga
gtcgttgaactgcttcttcttgtcttttttggcgtctcatttccattatttcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAAGTGTCAAGTCGATCCAGTC 436 587 243 Antisense
AGTGTCAAGTCGATCCAGTCGTCTT 660 55 248 Antisense
TCGTCTTCCATGGTGATGCCTTGGA 434 603 266 Antisense
GATGCCTTGGAAAAAGTTGTTCTCT 506 415 280 Antisense
GTTCTCTTTCATCAGAAATGCTCCG 602 443 298 Antisense
GAAATGCTCCGAATCCTTGAGCTTC 542 361 312 Antisense
TGCTCCGAATCCTTGAGCTTCTTCT 28 583 316 Antisense
GGCGTTCTTGTCGGAGTCGTTGAAC 386 539 348 Antisense
TGTCGGAGTCGTTGAACTGCTTCTT 531 557 356 Antisense
TCTTTTTTGGCGTCTCATTTCCATT 337 615 385 Antisense
GGCGTCTCATTTCCATTATTTCGAC 319 541 393 Antisense
Sequence Source Affymetrix Proprietary Database