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[176170_at]

Description Y119C1B.B /REP_DB=WormBase Gene ID /WP=CE25212 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 25      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 3.6
(-3)
A 		33.2
(-0.4)
A 		49.1
(1)
A 		71.3
(3)
A 		68
B 41.8
(1.1)
A 		58.5
(3)
A 		31.2
(-0.1)
A 		5.3
(-3)
A 		53
C 47.8
(0)
A 		12
(-3)
A 		19.3
(-2.4)
A 		83
(3)
P 		71
avr 31.1
(-3) 		34.6
(-2) 		33.2
(-2.4) 		53.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 24.8
(-1)
A 		8.8
(-3)
A 		14
(-2.4)
A 		29.1
(-0.5)
A 		56.9
(3)
A 		24
(-1.1)
A 		48
B 55.2
(3)
A 		34.6
(0.4)
A 		36.6
(0.7)
A 		19.4
(-1.4)
A 		6.9
(-3)
A 		6.9
(-3)
A 		48
C 18.8
(-1.8)
A 		57.2
(3)
A 		41.3
(1)
A 		9.3
(-3)
A 		15.6
(-2.2)
A 		43.8
(1.3)
A 		48
avr 32.9
(2.7) 		33.5
(3) 		30.6
(1.8) 		19.3
(-3) 		26.5
(0) 		24.9
(-0.6) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.3
(-3)
A 		7.2
(0.1)
A 		12.8
(3)
A 		10.4
(1.7)
A 		12
B 13.3
(2.5)
A 		14.5
(3)
A 		7.2
(-0.3)
A 		1.1
(-3)
A 		13
C 15.8
(3)
A 		3.4
(-3)
A 		6.7
(-1.4)
A 		14
(2.1)
P 		12
avr 10.1
(3) 		8.4
(-3) 		8.9
(-1.2) 		8.5
(-2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.6
(-2.3)
A 		3.1
(-3)
A 		3
(-3)
A 		7.4
(-1.1)
A 		17.2
(3)
A 		5.8
(-1.8)
A 		14
B 19.2
(3)
A 		11.5
(0.2)
A 		8.9
(-0.7)
A 		5.1
(-2.1)
A 		2.8
(-2.9)
A 		2.6
(-3)
A 		17
C 7
(-1)
A 		17.4
(3)
A 		10.5
(0.3)
A 		1.9
(-3)
A 		5.1
(-1.8)
A 		14.6
(1.9)
A 		16
avr 10.3
(2.6) 		10.7
(3) 		7.5
(-0.3) 		4.8
(-3) 		8.4
(0.7) 		7.7
(-0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18783
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.B NCBI
Target Description Y119C1B.B /REP_DB=WormBase Gene ID /WP=CE25212 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026549
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000012128 ENSEMBL cdna:SNAP chromosome:CEL140:I:4551186:4553122:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026549 5/11 Cross Hyb Matching Probes None
GENEFINDER00000012137 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4551185-4553122(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55882 Hypothetical protein Y119C1B.11 [Caenorhabditis elegans] ref|NP_001021720.1| Y119C1B.11 [Caenorhabditis elegans] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:176170_AT
ggtggggagcagccgtggcaaagatgaggatgtgttggttggatggagctggcggaggac
gtggattggtaccatttgcagccgaggatggagcactcgaggtggatcaagaaagaataa
aaattaagtttcttccaaagtgtcaagtcgatccagtcgtcttccatggtgatgccttgg
aaaaagttgttctctttcatcagaaatgctccgaatccttgagcttcttctctgtttcgg
cgttcttgtcggagtcgttgaactgcttcttcttgtcttttttggcgtctcatttccatt
atttcgacttgcatttttgtggttcgccgcagcagccttctttgattttttctcccgttt
cttctcttttttgctcattttctcataatgtttattgtttgttattttttgtatcgagtg
taaaacactcaaaccaaccaaataggccaacaaaatctgcgatagctgttctcttgaaat
atctccttttgggagaagccatcttccaacgattagatttacaagaagaagctgctcaag
gagctgaagccgcagctcactattatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGGGAGCAGCCGTGGCAAAGAT 232 497 110 Antisense
GAGGATGTGTTGGTTGGATGGAGCT 630 403 135 Antisense
GAGCTGGCGGAGGACGTGGATTGGT 125 387 155 Antisense
GATTGGTACCATTTGCAGCCGAGGA 190 435 173 Antisense
GAGGATGGAGCACTCGAGGTGGATC 172 403 193 Antisense
CTTGCATTTTTGTGGTTCGCCGCAG 608 217 417 Antisense
ACACTCAAACCAACCAAATAGGCCA 504 105 534 Antisense
AATCTGCGATAGCTGTTCTCTTGAA 290 169 563 Antisense
TCTCTTGAAATATCTCCTTTTGGGA 518 609 579 Antisense
GAAGCCATCTTCCAACGATTAGATT 236 345 604 Antisense
TGAAGCCGCAGCTCACTATTATCTT 160 575 654 Antisense
Sequence Source Affymetrix Proprietary Database