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[176169_at]

Description Y82E9BL.J /REP_DB=WormBase Gene ID /WP=CE23359 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 40      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 86.6
(1.9)
A 		36.3
(-3)
A 		80.9
(1.4)
A 		97.4
(3)
P 		61
B 87.3
(-0.2)
A 		78.3
(-2.9)
A 		78
(-3)
A 		97.8
(3)
P 		20
C 109.4
(0.1)
A 		126.6
(1.6)
P 		75.5
(-3)
A 		141.6
(3)
P 		66
avr 94.4
(-0.1) 		80.4
(-2.6) 		78.1
(-3) 		112.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 98.7
(2.3)
A 		85.3
(0.6)
P 		103.6
(3)
P 		82.7
(0.2)
P 		76
(-0.7)
M 		58.5
(-3)
A 		45
B 75.3
(-0.6)
A 		116.5
(2.8)
P 		117.1
(2.9)
P 		118.6
(3)
P 		46.7
(-3)
A 		79.6
(-0.3)
P 		72
C 53.2
(-0.8)
A 		111.5
(3)
P 		79.9
(0.9)
P 		110.5
(2.9)
P 		20
(-3)
A 		76.4
(0.7)
P 		92
avr 75.7
(-0) 		104.4
(3) 		100.2
(2.6) 		103.9
(2.9) 		47.6
(-3) 		71.5
(-0.5) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 31.5
(3)
A 		7.9
(-3)
A 		21.1
(0.4)
A 		14.3
(-1.4)
P 		24
B 27.8
(3)
A 		19.3
(-2.3)
A 		18.1
(-3)
A 		20.8
(-1.3)
P 		10
C 36.2
(2.9)
A 		36.4
(3)
P 		26.3
(-1.8)
A 		23.9
(-3)
P 		13
avr 31.8
(3) 		21.2
(-2.3) 		21.8
(-2) 		19.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 18.2
(-1.5)
A 		30.3
(3)
P 		22.6
(0.1)
P 		21
(-0.5)
P 		22.9
(0.2)
M 		14.2
(-3)
A 		16
B 26.2
(-0.8)
A 		38.8
(3)
P 		28.4
(-0.2)
P 		31.4
(0.8)
P 		19
(-3)
A 		29.7
(0.2)
P 		20
C 19.7
(-0.1)
A 		34
(3)
P 		20.3
(0)
P 		22.2
(0.4)
P 		6.5
(-3)
A 		25.6
(1.2)
P 		28
avr 21.4
(-1.3) 		34.4
(3) 		23.8
(-0.5) 		24.9
(-0.1) 		16.1
(-3) 		23.2
(-0.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18981
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.J NCBI
Target Description Y82E9BL.J /REP_DB=WormBase Gene ID /WP=CE23359 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064980(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064980 NCBI Caenorhabditis elegans Y82E9BL.14 (Y82E9BL.14) mRNA, complete cds. 10/11 None
SNAP00000041767 ENSEMBL cdna:SNAP chromosome:CEL140:III:1313362:1320859:-1 9/11 None
GENEFINDER00000041786 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1313362:1315172:-1 10/11 None
Y82E9BL.14 ENSEMBL cdna:known chromosome:CEL140:III:1313348:1315208:-1 gene:Y82E9BL.14 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1313361-1315172(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.14
Entrez Gene 190761 Entrez gene
SwissProt Q95XB9 EMBL-EBI
WormBase CE33001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66037 Hypothetical protein Y82E9BL.14 [Caenorhabditis elegans] ref|NP_497381.2| Y82E9BL.14 [Caenorhabditis elegans] 1.0E-171
blast AAK66037 Hypothetical protein Y82E9BL.14 [Caenorhabditis elegans] ref|NP_497381.2| Y82E9BL.14 [Caenorhabditis elegans] 1.0E-151
blast AAG37976 Hypothetical protein Y82E9BL.11 [Caenorhabditis elegans] ref|NP_497383.1| Y82E9BL.11 [Caenorhabditis elegans] 1.0E-138
blast AAG37975 Hypothetical protein Y82E9BL.10 [Caenorhabditis elegans] ref|NP_497384.1| Y82E9BL.10 [Caenorhabditis elegans] 1.0E-113
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 7.0E-29
blast AAG37978 Hypothetical protein Y82E9BL.13 [Caenorhabditis elegans] ref|NP_497378.1| Y82E9BL.13 [Caenorhabditis elegans] 7.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.5E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.3E-44
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.2E-29
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.2E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-9
Sequence
Target Sequence 
>C. ELEGANS:176169_AT
gcactgagataatcacccttctctcaatcttcaaaccagatctgtgtcgcttatcgcagt
ggagagaagcacaaaccgtgtacttccgcggaaatggtgaagatgctcctattgaggaat
tttttaatttccgcgagttttacatttctgtaggccggcttttgatggaagatgtggtta
aggttagagatatccttctcgaacgcgacaccttccttcaatgcgagataaacgccggat
tcttggcaactcaaaccgaaatcgcaaaagttttcgaatattctggtggtggaaatagct
ttgagtacacgacgaacaccgccaagtttaatattagagtcgattcgtcacacttgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGAGATAATCACCCTTCTCTC 283 315 476 Antisense
CCCTTCTCTCAATCTTCAAACCAGA 611 259 491 Antisense
AAACCAGATCTGTGTCGCTTATCGC 504 125 508 Antisense
AAGCACAAACCGTGTACTTCCGCGG 10 127 542 Antisense
ATTTCCGCGAGTTTTACATTTCTGT 608 15 602 Antisense
ACATTTCTGTAGGCCGGCTTTTGAT 173 105 617 Antisense
AGAGATATCCTTCTCGAACGCGACA 707 67 661 Antisense
GACACCTTCCTTCAATGCGAGATAA 655 367 682 Antisense
GCCGGATTCTTGGCAACTCAAACCG 26 285 709 Antisense
TTTGAGTACACGACGAACACCGCCA 202 655 775 Antisense
TAGAGTCGATTCGTCACACTTGTGG 494 651 810 Antisense
Sequence Source Affymetrix Proprietary Database