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[176167_at]

Description Y38F2AR.I /REP_DB=WormBase Gene ID /WP=CE21625 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 08      6grp_total > 46      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 102.4
(3)
P 		40.1
(-0.9)
P 		7.7
(-3)
A 		40.5
(-0.9)
A 		95
B 107.9
(3)
P 		56.7
(-1.2)
A 		62.7
(-0.7)
P 		35.2
(-3)
A 		73
C 106.7
(3)
P 		64.6
(-1)
A 		43.1
(-3)
P 		84.9
(0.9)
P 		64
avr 105.7
(3) 		53.8
(-1.6) 		37.8
(-3) 		53.5
(-1.6) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 42.9
(2.5)
A 		44.5
(3)
A 		38.3
(1.3)
A 		40.1
(1.8)
A 		23.2
(-3)
A 		28.8
(-1.4)
A 		21
B 50.5
(1.4)
P 		40.7
(0.2)
P 		40.8
(0.2)
A 		50.8
(1.4)
A 		15.6
(-3)
A 		63.2
(3)
P 		48
C 28.9
(0.9)
A 		21.6
(-0.2)
A 		22.6
(-0)
A 		39.2
(2.4)
A 		2
(-3)
A 		43.7
(3)
A 		42
avr 40.8
(2.2) 		35.6
(1.2) 		33.9
(0.9) 		43.4
(2.7) 		13.6
(-3) 		45.2
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 37.3
(3)
P 		8.7
(-1.9)
P 		2
(-3)
A 		5.9
(-2.3)
A 		35
B 34.4
(3)
P 		14
(-1.6)
A 		14.5
(-1.4)
P 		7.5
(-3)
A 		27
C 35.3
(3)
P 		18.6
(-1.8)
A 		15
(-2.8)
P 		14.3
(-3)
P 		21
avr 35.7
(3) 		13.8
(-2) 		10.5
(-2.7) 		9.2
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.9
(-2.4)
A 		15.8
(3)
A 		8.3
(-2.1)
A 		10.2
(-0.8)
A 		7
(-3)
A 		7
(-3)
A 		9
B 17.6
(0.9)
P 		13.6
(-0.5)
P 		9.9
(-1.8)
A 		13.5
(-0.5)
A 		6.3
(-3)
A 		23.6
(3)
P 		17
C 10.7
(1.3)
A 		6.6
(-0.4)
A 		5.8
(-0.8)
A 		7.9
(0.1)
A 		0.6
(-3)
A 		14.6
(3)
A 		14
avr 12.1
(1.3) 		12
(1.2) 		8
(-1.1) 		10.5
(0.4) 		4.6
(-3) 		15.1
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19250
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.I NCBI
Target Description Y38F2AR.I /REP_DB=WormBase Gene ID /WP=CE21625 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067792 NCBI Caenorhabditis elegans Y38F2AR.6 (Y38F2AR.6) mRNA, complete cds. 11/11 None
SNAP00000033662 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2349270:2368386:1 11/11 None
GENEFINDER00000033681 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2349270:2367054:1 10/11 None
Y38F2AR.6 ENSEMBL cdna:known chromosome:CEL140:IV:2349270:2353075:1 gene:Y38F2AR.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075646 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014623 2/11 Cross Hyb Matching Probes None
Y35H6.3 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2347608-2353081(+) 99.29 100.0
chrX:29678-34440(-) 92.82 92.82
Public Domain and Genome References
Gene Title
Ensembl Y38F2AR.6
Entrez Gene 189678 Entrez gene
SwissProt Q95XS6 EMBL-EBI
WormBase CE27615 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70297 Hypothetical protein CBG16818 [Caenorhabditis briggsae] 0.0
blast CAE70297 Hypothetical protein CBG16818 [Caenorhabditis briggsae] 1.0E-172
blast NP_500193 Y38F2AR.6 [Caenorhabditis elegans] gb|AAK68447.1| Hypothetical protein Y38F2AR.6 [Caenorhabditis elegans] 1.0E-153
blast NP_500193 Y38F2AR.6 [Caenorhabditis elegans] gb|AAK68447.1| Hypothetical protein Y38F2AR.6 [Caenorhabditis elegans] 1.0E-152
blast NP_500193 Y38F2AR.6 [Caenorhabditis elegans] gb|AAK68447.1| Hypothetical protein Y38F2AR.6 [Caenorhabditis elegans] 1.0E-127
blast NP_500194 Y38F2AR.5 [Caenorhabditis elegans] gb|AAU87815.1| Hypothetical protein Y38F2AR.5 [Caenorhabditis elegans] 1.0E-94
blast CAE70297 Hypothetical protein CBG16818 [Caenorhabditis briggsae] 1.0E-82
blast NP_500194 Y38F2AR.5 [Caenorhabditis elegans] gb|AAU87815.1| Hypothetical protein Y38F2AR.5 [Caenorhabditis elegans] 3.0E-48
Sequence
Target Sequence 
>C. ELEGANS:176167_AT
acgagtagtttcttgccatacgtgccgaaagtttggtcagtgcaaaatacgtaccgaatt
ccgacagacgtcattttaaacactattcggacgggcggcaccgaaggattgggcagagca
gagctgggaaaaacggtcggttacgactctacgaacaaatccggcggccgtcgagtatct
gattggattgtaaaatgcacaacggagcatcctgatcatattggacaatttcagaagatg
aacggaaaagttcgcactattagatatttctggaaacaaaacgagcaaccggagcgtttt
gagaagcttttcgaagaatttcagcaattaaccgcatgccaatgcccatttaaaatagga
gaagttataaagtttcctgagaagaaattgaacactctacgcgtcagtgacgtcactttg
aagcgattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGTAGTTTCTTGCCATACGTGC 360 93 319 Antisense
TACGTGCCGAAAGTTTGGTCAGTGC 266 647 337 Antisense
CGTACCGAATTCCGACAGACGTCAT 524 245 368 Antisense
TAAACACTATTCGGACGGGCGGCAC 55 639 395 Antisense
GGCGGCACCGAAGGATTGGGCAGAG 126 541 412 Antisense
ACGACTCTACGAACAAATCCGGCGG 645 91 461 Antisense
AAATCCGGCGGCCGTCGAGTATCTG 178 119 475 Antisense
TGCACAACGGAGCATCCTGATCATA 495 577 514 Antisense
TTAACCGCATGCCAATGCCCATTTA 235 683 646 Antisense
GAACACTCTACGCGTCAGTGACGTC 418 351 708 Antisense
AGTGACGTCACTTTGAAGCGATTCA 438 59 724 Antisense
Sequence Source Affymetrix Proprietary Database