[Home] | [Total List]

[176166_s_at]

Description Y119D3B.S /REP_DB=WormBase Gene ID /WP=CE26490 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 71      6grp_total > 41      4grp_total > 47      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 390.5
(3)
P 		215
(-2.2)
P 		188.8
(-3)
P 		200.3
(-2.7)
P 		202
B 384.6
(3)
P 		208.1
(-2.1)
P 		215.1
(-1.9)
P 		178.2
(-3)
P 		206
C 419.6
(3)
P 		168.9
(-3)
P 		200.5
(-2.2)
P 		260.9
(-0.8)
P 		251
avr 398.2
(3) 		197.3
(-3) 		201.5
(-2.9) 		213.1
(-2.5) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 240
(-0.3)
P 		252.4
(-0.1)
P 		401.7
(2.3)
P 		448.8
(3)
P 		190.1
(-1.1)
P 		69.3
(-3)
P 		380
B 261.3
(1)
P 		350.1
(3)
P 		331.8
(2.6)
P 		266
(1.1)
P 		224.9
(0.1)
P 		89.3
(-3)
P 		261
C 319.4
(2.7)
P 		329.2
(3)
P 		300.8
(2.2)
P 		305.6
(2.4)
P 		220
(0.1)
P 		103.7
(-3)
P 		226
avr 273.6
(1.3) 		310.6
(2.2) 		344.8
(3) 		340.1
(2.9) 		211.7
(-0.1) 		87.4
(-3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 142.2
(3)
P 		46.7
(-2.1)
P 		49.4
(-1.9)
P 		29.3
(-3)
P 		113
B 122.7
(3)
P 		51.4
(-2.1)
P 		49.9
(-2.2)
P 		38
(-3)
P 		85
C 138.9
(3)
P 		48.6
(-2.7)
P 		69.9
(-1.4)
P 		44
(-3)
P 		95
avr 134.6
(3) 		48.9
(-2.3) 		56.4
(-1.8) 		37.1
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 44.2
(-1.3)
P 		89.8
(1.5)
P 		87.5
(1.4)
P 		113.8
(3)
P 		57.4
(-0.5)
P 		16.9
(-3)
P 		97
B 90.9
(1.2)
P 		116.5
(3)
P 		80.6
(0.4)
P 		70.5
(-0.3)
P 		91.4
(1.2)
P 		33.3
(-3)
P 		83
C 118.4
(3)
P 		100.4
(1.7)
P 		76.5
(-0)
P 		61.4
(-1.1)
P 		71.2
(-0.4)
P 		34.7
(-3)
P 		84
avr 84.5
(1.6) 		102.2
(3) 		81.5
(1.3) 		81.9
(1.4) 		73.3
(0.7) 		28.3
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176166_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19024
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.S NCBI
Target Description Y119D3B.S /REP_DB=WormBase Gene ID /WP=CE26490 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064958(9), NM_064954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064958 NCBI Caenorhabditis elegans Y119D3B.4 (Y119D3B.4) mRNA, complete cds. 9/11 None
NM_064954 NCBI Caenorhabditis elegans Y119D3B.6 (Y119D3B.6) mRNA, complete cds. 11/11 A 
Y119D3B.6 ENSEMBL cdna:known chromosome:CEL140:III:1249509:1251814:1 gene:Y119D3B.6 11/11 A 
Y119D3B.4 ENSEMBL cdna:known chromosome:CEL140:III:1259414:1260174:1 gene:Y119D3B.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1249199-1251814(+) 100.0 100.0
chrIII:1258959-1260174(+) 72.12 72.12
Public Domain and Genome References
Gene Title

Ensembl Y119D3B.6
Y119D3B.4
Entrez Gene 175290 Entrez gene
191038 Entrez gene
SwissProt Q95Y61 EMBL-EBI
Q95Y63 EMBL-EBI
WormBase CE27462 Wormbase
CE27463 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29720 Hypothetical protein Y119D3B.6 [Caenorhabditis elegans] ref|NP_497355.1| Y119D3B.6 [Caenorhabditis elegans] 1.0E-147
blast AAK29722 Hypothetical protein Y119D3B.4 [Caenorhabditis elegans] ref|NP_497359.1| Y119D3B.4 [Caenorhabditis elegans] 3.0E-46
blast AAK29720 Hypothetical protein Y119D3B.6 [Caenorhabditis elegans] ref|NP_497355.1| Y119D3B.6 [Caenorhabditis elegans] 3.0E-46
blast AAK29722 Hypothetical protein Y119D3B.4 [Caenorhabditis elegans] ref|NP_497359.1| Y119D3B.4 [Caenorhabditis elegans] 1.0E-45
blast CAB03491 Hypothetical protein ZC47.3 [Caenorhabditis elegans] ref|NP_001022976.1| ZC47.3 [Caenorhabditis elegans] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:176166_S_AT
gagccaatggagcaaggtcaccagtttgatatctcgcgtttggattaaagatatgaccat
actcaagcatttattccatttaaatagattttatgtcaaagctaaatcgattccggttga
gagtgcgattaagataagagatattcttctaaacaacgccactttccaaaattgcgttat
tcgcattgccgagtggaaaactggcataccggaaatagcaaaagtatttcaaccggacta
cacagacgggaatctaattcgttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAATGGAGCAAGGTCACCAGT 163 385 696 Antisense
TCACCAGTTTGATATCTCGCGTTTG 93 625 713 Antisense
ATGACCATACTCAAGCATTTATTCC 668 45 748 Antisense
GTCAAAGCTAAATCGATTCCGGTTG 124 465 790 Antisense
ATTCCGGTTGAGAGTGCGATTAAGA 480 3 805 Antisense
GATATTCTTCTAAACAACGCCACTT 370 427 835 Antisense
GCCACTTTCCAAAATTGCGTTATTC 32 279 853 Antisense
TGCGTTATTCGCATTGCCGAGTGGA 477 583 868 Antisense
GAGTGGAAAACTGGCATACCGGAAA 565 401 886 Antisense
ATTTCAACCGGACTACACAGACGGG 330 13 921 Antisense
CACAGACGGGAATCTAATTCGTTAT 263 113 936 Antisense
Sequence Source Affymetrix Proprietary Database