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[176165_at]

Description Y119D3B.S /REP_DB=WormBase Gene ID /WP=CE26490 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 26      6grp_total > 41      4grp_total > 38      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 311.4
(3)
P 		253.9
(0.6)
P 		169
(-3)
A 		238.1
(-0.1)
P 		142
B 436.3
(3)
P 		199.2
(-2.1)
A 		213.4
(-1.8)
P 		157
(-3)
A 		279
C 325.8
(3)
P 		196.2
(-2.7)
A 		188.5
(-3)
P 		282
(1.1)
P 		137
avr 357.8
(3) 		216.4
(-2.1) 		190.3
(-3) 		225.7
(-1.7) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 288.2
(2.4)
P 		248.4
(1.6)
P 		320.6
(3)
P 		276.3
(2.1)
P 		193.1
(0.5)
A 		17.9
(-3)
A 		303
B 277.5
(0.4)
P 		268.6
(0.2)
P 		420.1
(3)
P 		277.1
(0.3)
P 		148.4
(-2)
P 		96.7
(-3)
A 		323
C 231.2
(0.1)
P 		280.8
(1.3)
P 		358.3
(3)
P 		345.2
(2.7)
P 		93
(-3)
P 		92.4
(-3)
A 		266
avr 265.6
(1) 		265.9
(1) 		366.3
(3) 		299.5
(1.7) 		144.8
(-1.5) 		69
(-3) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 113.4
(3)
P 		55.1
(-1.5)
P 		44.2
(-2.3)
A 		34.8
(-3)
P 		79
B 139.1
(3)
P 		49.2
(-2.1)
A 		49.4
(-2.1)
P 		33.5
(-3)
A 		106
C 107.9
(3)
P 		56.4
(-2.1)
A 		65.7
(-1.2)
P 		47.5
(-3)
P 		60
avr 120.1
(3) 		53.6
(-1.9) 		53.1
(-1.9) 		38.6
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 53.1
(0.5)
P 		88.3
(3)
P 		69.8
(1.7)
P 		70.1
(1.7)
P 		58.3
(0.9)
A 		4.4
(-3)
A 		84
B 96.6
(2.5)
P 		89.4
(1.9)
P 		102
(3)
P 		73.4
(0.4)
P 		60.3
(-0.8)
P 		36.1
(-3)
A 		66
C 85.7
(2.5)
P 		85.7
(2.5)
P 		91.2
(3)
P 		69.4
(0.9)
P 		30.1
(-3)
P 		30.9
(-2.9)
A 		61
avr 78.5
(2.1) 		87.8
(3) 		87.7
(3) 		71
(1.4) 		49.6
(-0.6) 		23.8
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19024
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.S NCBI
Target Description Y119D3B.S /REP_DB=WormBase Gene ID /WP=CE26490 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064954 NCBI Caenorhabditis elegans Y119D3B.6 (Y119D3B.6) mRNA, complete cds. 11/11 A 
Y119D3B.6 ENSEMBL cdna:known chromosome:CEL140:III:1249509:1251814:1 gene:Y119D3B.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064958 1/11 Cross Hyb Matching Probes A 
SNAP00000002025 1/11 Cross Hyb Matching Probes None
Y119D3B.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1249199-1251814(+) 100.0 100.0
chrIII:1258959-1260174(+) 72.12 72.12
Public Domain and Genome References
Gene Title
Ensembl Y119D3B.6
Entrez Gene 175290 Entrez gene
SwissProt Q95Y63 EMBL-EBI
WormBase CE27463 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29720 Hypothetical protein Y119D3B.6 [Caenorhabditis elegans] ref|NP_497355.1| Y119D3B.6 [Caenorhabditis elegans] 1.0E-147
blast AAK29722 Hypothetical protein Y119D3B.4 [Caenorhabditis elegans] ref|NP_497359.1| Y119D3B.4 [Caenorhabditis elegans] 1.0E-45
blast CAB03491 Hypothetical protein ZC47.3 [Caenorhabditis elegans] ref|NP_001022976.1| ZC47.3 [Caenorhabditis elegans] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-10
Sequence
Target Sequence 
>C. ELEGANS:176165_AT
gagatgatgcctccaatcacgatttggatgtaattttgaaggctcgattagcccatttat
ctgtgtcgtttgatactgaaaacaaagaaaatcgacgtattcactcggaatccttggctt
ctactttaaaaaacctagaaaactgcacaacacggagcctcctgttaaaggatctcagtt
gccacgaaattctgctccttctaccatttttcaatgttctgggggagatttcaattgatg
gcatcacatgtatcgatcagctccgagaagttggacagcggagccaatggagcaaggtca
ccagtttgatatctcgcgtttggattaaagatatgaccatactcaagcatttattccatt
taaatagattttatgtcaaagctaaatcgattccggttgagagtgcgattaagataagag
atattcttctaaacaacgccactttccaaaattgcgttattcgcattgccgagtggaaaa
ctggcataccggaaatagcaaaagtatttcaaccggactacacagacgggaatctaattc
gttatagaaattcattcactatttcttttacttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGATGCCTCCAATCACGATTT 694 395 416 Antisense
GAAGGCTCGATTAGCCCATTTATCT 653 331 453 Antisense
TAGCCCATTTATCTGTGTCGTTTGA 700 651 464 Antisense
TTCACTCGGAATCCTTGGCTTCTAC 686 685 515 Antisense
TGCACAACACGGAGCCTCCTGTTAA 628 577 559 Antisense
GTTAAAGGATCTCAGTTGCCACGAA 343 443 579 Antisense
CAGTTGCCACGAAATTCTGCTCCTT 389 207 591 Antisense
GGCATCACATGTATCGATCAGCTCC 326 537 655 Antisense
GATCAGCTCCGAGAAGTTGGACAGC 284 421 670 Antisense
GTTGGACAGCGGAGCCAATGGAGCA 184 437 685 Antisense
TTCATTCACTATTTCTTTTACTTCT 466 689 966 Antisense
Sequence Source Affymetrix Proprietary Database