[Home] | [Total List]

[176160_at]

Description F09G8.9 /REP_DB=WormBase Gene ID /WP=CE23638 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      4grp_high_8_8 > 37      6grp_total > 15      4grp_total > 43      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 188.5
(-2)
P 		268.4
(3)
P 		202.2
(-1.1)
P 		172
(-3)
A 		96
B 205.4
(3)
P 		194
(1.7)
P 		153.2
(-3)
P 		158
(-2.4)
P 		52
C 134.4
(-3)
P 		240.3
(3)
P 		162.8
(-1.4)
A 		230.3
(2.4)
P 		106
avr 176.1
(-2.7) 		234.2
(3) 		172.7
(-3) 		186.8
(-1.6) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 320
(3)
P 		255
(1.3)
P 		157.6
(-1.2)
P 		125.1
(-2.1)
P 		127.2
(-2)
M 		88.7
(-3)
A 		231
B 322.4
(3)
P 		262.1
(1.4)
P 		148.4
(-1.7)
P 		165.5
(-1.2)
M 		129.7
(-2.2)
M 		98.9
(-3)
P 		224
C 237.6
(1.5)
P 		292.2
(3)
P 		175.2
(-0.2)
P 		121.9
(-1.6)
A 		97.1
(-2.3)
P 		71.4
(-3)
P 		221
avr 293.3
(3) 		269.8
(2.3) 		160.4
(-0.9) 		137.5
(-1.5) 		118
(-2.1) 		86.3
(-3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 68.6
(3)
P 		58.3
(1.6)
P 		52.9
(0.8)
P 		25.2
(-3)
A 		43
B 65.5
(3)
P 		47.9
(-0.3)
P 		35.5
(-2.7)
P 		33.7
(-3)
P 		32
C 44.5
(-1.9)
P 		69.1
(3)
P 		56.8
(0.6)
A 		38.8
(-3)
P 		30
avr 59.5
(3) 		58.4
(2.8) 		48.4
(0.5) 		32.6
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 59
(0.2)
P 		90.7
(3)
P 		34.3
(-1.9)
P 		31.7
(-2.1)
P 		38.4
(-1.5)
M 		21.6
(-3)
A 		69
B 112.2
(3)
P 		87.3
(1)
P 		36
(-3)
P 		43.8
(-2.4)
M 		52.7
(-1.7)
M 		36.9
(-2.9)
P 		76
C 88.1
(2.9)
P 		89.2
(3)
P 		44.6
(-1.1)
P 		24.5
(-2.9)
A 		31.4
(-2.3)
P 		23.9
(-3)
P 		65
avr 86.4
(2.7) 		89.1
(3) 		38.3
(-1.9) 		33.3
(-2.4) 		40.8
(-1.7) 		27.5
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6520
Sequence Type Exemplar sequence
Representative Public ID F09G8.9 NCBI
Target Description F09G8.9 /REP_DB=WormBase Gene ID /WP=CE23638 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066417
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034508 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8270706:8272084:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066417 8/11 Cross Hyb Matching Probes None
SNAP00000034505 5/11 Cross Hyb Matching Probes None
F09G8.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8270701-8272080(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86263 Hypothetical protein F09G8.10 [Caenorhabditis elegans] 6.0E-96
blast CAE70175 Hypothetical protein CBG16648 [Caenorhabditis briggsae] 6.0E-68
blast NP_498818 F09G8.9 [Caenorhabditis elegans] gb|AAA28003.3| Hypothetical protein F09G8.9 [Caenorhabditis elegans] gb|AAQ96602.1| MiRP2 [Caenorhabditis elegans] sp|P34394|YLS9_CAEEL Hypothetical protein F09G8.9 in chromosome III 5.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034508 1 221-243
Sequence
Target Sequence 
>C. ELEGANS:176160_AT
ggactctcgattaaccacgttttcgagattcatgatgatggagatggtgatttattttgt
gtgatgagaaattccgatgcttcctctgaactaggaactctaactgatttcgatcgaggt
ccaattggggacaattatagaagaacaccatctccggttcgaaaaccaactaccgaaaca
acaaaagaagatctggaacctgaaaagaaagtgaaatttgcacttccttctcccgaactt
ccagcttcttcgccgccaccaaaaccacagaaaccaaaactgccatctcagaaaattgct
ccaattacagttcagccaacaatcgtgacgattccggataaaatacataaagaaggaaaa
gagcaacaaggagcatgtgcatattgtaaaagagaatgtggattatgtattgtcaccatc
tcctatcctaccaaatactttgattttctactcgtcatcatcatgacttttgtgttcctt
tgtctagtatatttacttatttggattgaagttttgttgaattcttctcggcctgatcca
aagcatcgtgtctattaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTCTCGATTAACCACGTTTTCG 59 525 148 Antisense
TGAGAAATTCCGATGCTTCCTCTGA 180 569 212 Antisense
GATTTCGATCGAGGTCCAATTGGGG 500 427 253 Antisense
AGTGAAATTTGCACTTCCTTCTCCC 140 61 357 Antisense
ACAGTTCAGCCAACAATCGTGACGA 587 107 454 Antisense
TTATGTATTGTCACCATCTCCTATC 32 681 550 Antisense
TCTCCTATCCTACCAAATACTTTGA 171 605 566 Antisense
GATTTTCTACTCGTCATCATCATGA 140 429 589 Antisense
TGACTTTTGTGTTCCTTTGTCTAGT 155 571 611 Antisense
AGTTTTGTTGAATTCTTCTCGGCCT 496 63 657 Antisense
ATCCAAAGCATCGTGTCTATTACCC 685 39 683 Antisense
Sequence Source Affymetrix Proprietary Database