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[176159_s_at]

Description C07H6.6 /REP_DB=WormBase Gene ID /WP=CE26358 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_high_8_8 > 48      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 47      6grp_highest_sub > Da      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 345.4
(3)
P 		96.3
(-3)
P 		100.2
(-2.9)
M 		147
(-1.8)
A 		249
B 270.9
(3)
P 		107.4
(-2.6)
A 		123.4
(-2.1)
A 		96.4
(-3)
P 		175
C 285.6
(3)
P 		137.2
(-3)
A 		186.9
(-1)
P 		199.5
(-0.5)
P 		148
avr 300.6
(3) 		113.6
(-3) 		136.8
(-2.3) 		147.6
(-1.9) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 170.8
(-3)
P 		265.9
(-0.9)
P 		207.8
(-2.2)
P 		226.8
(-1.8)
P 		333.4
(0.5)
P 		447.7
(3)
P 		277
B 199.7
(-3)
P 		214.8
(-2.6)
P 		214.9
(-2.6)
P 		268.7
(-1.1)
P 		278.5
(-0.9)
P 		422.2
(3)
P 		223
C 180.5
(-3)
P 		222.7
(-2.2)
P 		238.5
(-1.8)
P 		316.2
(-0.3)
P 		228
(-2.1)
P 		481.3
(3)
P 		301
avr 183.7
(-3) 		234.5
(-1.9) 		220.4
(-2.2) 		270.6
(-1) 		280
(-0.8) 		450.4
(3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 125.7
(3)
P 		20.9
(-3)
P 		26.2
(-2.7)
M 		21.5
(-3)
A 		105
B 86.4
(3)
P 		26.5
(-2.5)
A 		28.6
(-2.3)
A 		20.5
(-3)
P 		66
C 94.6
(3)
P 		39.5
(-2.4)
A 		65.2
(0.1)
P 		33.6
(-3)
P 		61
avr 102.2
(3) 		29
(-2.7) 		40
(-1.8) 		25.2
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 31.5
(-3)
P 		94.6
(1.9)
P 		45.2
(-1.9)
P 		57.5
(-1)
P 		100.6
(2.3)
P 		109
(3)
P 		78
B 69.5
(-2)
P 		71.5
(-1.9)
P 		52.2
(-3)
P 		71.2
(-1.9)
P 		113.1
(0.5)
P 		157.4
(3)
P 		105
C 66.9
(-2.6)
P 		68
(-2.6)
P 		60.7
(-3)
P 		63.6
(-2.8)
P 		73.8
(-2.2)
P 		161.1
(3)
P 		100
avr 56
(-2.8) 		78
(-1.3) 		52.7
(-3) 		64.1
(-2.2) 		95.8
(-0.1) 		142.5
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176159_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7581
Sequence Type Exemplar sequence
Representative Public ID C07H6.6 NCBI
Target Description C07H6.6 /REP_DB=WormBase Gene ID /WP=CE26358 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066249 NCBI Caenorhabditis elegans CLocK (biological timing) abnormality family member (clk-2) (clk-2) mRNA, complete cds. 11/11 None
SNAP00000039492 ENSEMBL cdna:SNAP chromosome:CEL140:III:7515316:7518443:-1 11/11 None
GENEFINDER00000039502 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7515316:7518443:-1 11/11 None
C07H6.6 ENSEMBL cdna:known chromosome:CEL140:III:7515142:7518443:-1 gene:C07H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7515313-7518441(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clk-2
Ensembl C07H6.6
Entrez Gene 176065 Entrez gene
SwissProt Q95YE9 EMBL-EBI
WormBase CE30240 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
723 telomere maintenance inferred from direct assay QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85444 Clock (biological timing) abnormality protein 2 [Caenorhabditis elegans] ref|NP_498650.2| CLocK (biological timing) abnormality family member (clk-2) [Caenorhabditis elegans] gb|AAL28024.1| CLK-2 [Caenorhabditis elegans] sp|Q95YE9|CLK2_CAEEL Telomere length regulation protein clk-2 (Clock abnormal protein 2) emb|CAC44622.1| putative telomere binding protein [Caenorhabditis elegans] 0.0
blast CAE64458 Hypothetical protein CBG09171 [Caenorhabditis briggsae] 0.0
blast XP_697398 PREDICTED: similar to RIKEN cDNA 1200003M09 [Danio rerio] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:176159_S_AT
gaagatccccacagacttttagttcctgaatggcgacgaatggtggatgctcgcattgct
gcaaataccagaagaattggaacgacgcgagagccaccaagagccggagttgtcaatcgt
ctcgcacaagctgccaaatatatgttttatcctttgttggttttgccacgtggtgagaac
gcaagtcttttgggcaaggactccgatctactcgcctcactcatcatggttgcatcgatg
gtttatgtgagatgtggcgtatgtcctcaaattcatcgaatgtcaagtgagcttatatca
tatgcaacgcctcatcgattctctgaaaacgcaaaactacggactgcctgcatcattgcc
catctgaatgtgacgactttgttgcctggagatcttatggatgaactgtttgatgtaccg
gcactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCCCCACAGACTTTTAGTTC 310 335 1954 Antisense
ATGGTGGATGCTCGCATTGCTGCAA 516 49 1993 Antisense
TCGTCTCGCACAAGCTGCCAAATAT 74 605 2070 Antisense
TATCCTTTGTTGGTTTTGCCACGTG 588 653 2101 Antisense
TTTGGGCAAGGACTCCGATCTACTC 104 665 2142 Antisense
CCTCACTCATCATGGTTGCATCGAT 85 269 2168 Antisense
GATGTGGCGTATGTCCTCAAATTCA 564 407 2204 Antisense
ATCATATGCAACGCCTCATCGATTC 704 29 2250 Antisense
CAAAACTACGGACTGCCTGCATCAT 485 189 2285 Antisense
GAATGTGACGACTTTGTTGCCTGGA 609 331 2319 Antisense
GAACTGTTTGATGTACCGGCACTTA 205 349 2356 Antisense
Sequence Source Affymetrix Proprietary Database