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[176155_at]

Description ZK688.3 /REP_DB=WormBase Gene ID /WP=CE00461 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 62      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 45      6grp_total > 72      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2456
1 2 3 4 range
A 1352
(-3)
P 		1571.1
(-2.3)
P 		1733.4
(-1.8)
P 		3279.8
(3)
P 		1928
B 1327.8
(-3)
P 		1581.5
(-2.4)
P 		1585.5
(-2.4)
P 		3784
(3)
P 		2456
C 1494.6
(-3)
P 		1870.9
(-1.9)
P 		1619.8
(-2.6)
P 		3605
(3)
P 		2110
avr 1391.5
(-3) 		1674.5
(-2.2) 		1646.2
(-2.3) 		3556.3
(3) 		2165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1755
1 2 3 4 5 6 range
A 1544.8
(-1.7)
P 		1863.8
(-0.4)
P 		2696
(3)
P 		2503.8
(2.2)
P 		1986
(0.1)
P 		1217.7
(-3)
P 		1478
B 1394.1
(-3)
P 		1916
(-0.4)
P 		2603.6
(3)
P 		2274.4
(1.4)
P 		2491.3
(2.4)
P 		1388.6
(-3)
P 		1215
C 1316.5
(-3)
P 		1872.1
(-1)
P 		2225.4
(0.3)
P 		2972.4
(3)
P 		1640.6
(-1.8)
P 		1533.7
(-2.2)
P 		1656
avr 1418.5
(-2.8) 		1884
(-0.5) 		2508.3
(2.6) 		2583.5
(3) 		2039.3
(0.3) 		1380
(-3) 		1204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 492.2
(3)
P 		341
(-3)
P 		453.1
(1.4)
P 		480.1
(2.5)
P 		151
B 423.4
(-2.2)
P 		390.6
(-2.7)
P 		367.4
(-3)
P 		806.4
(3)
P 		439
C 494.7
(-3)
P 		537.9
(-0.7)
P 		564.6
(0.7)
P 		607.9
(3)
P 		113
avr 470.1
(-1.6) 		423.2
(-3) 		461.7
(-1.9) 		631.5
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 284.8
(-3)
P 		662.9
(3)
P 		587.1
(1.8)
P 		635
(2.6)
P 		599.3
(2)
P 		296.5
(-2.8)
P 		378
B 485.1
(-3)
P 		637.8
(-1.3)
P 		632.2
(-1.3)
P 		602.4
(-1.7)
P 		1012.2
(3)
P 		517.8
(-2.6)
P 		527
C 488
(-3)
P 		571.2
(1.5)
P 		566.4
(1.3)
P 		597.8
(3)
P 		530.9
(-0.7)
P 		513.4
(-1.6)
P 		110
avr 419.3
(-3) 		624
(1.2) 		595.2
(0.6) 		611.7
(0.9) 		714.1
(3) 		442.6
(-2.5) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6887
Sequence Type Exemplar sequence
Representative Public ID ZK688.3 NCBI
Target Description ZK688.3 /REP_DB=WormBase Gene ID /WP=CE00461 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066314 NCBI Caenorhabditis elegans ZK688.3 (ZK688.3) mRNA, complete cds. 11/11 None
SNAP00000043626 ENSEMBL cdna:SNAP chromosome:CEL140:III:7893695:7894431:1 11/11 None
GENEFINDER00000043642 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7893695:7895380:1 11/11 None
ZK688.3 ENSEMBL cdna:known chromosome:CEL140:III:7893693:7894549:1 gene:ZK688.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7893692-7894429(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK688.3
Entrez Gene 176109 Entrez gene
SwissProt P34673 EMBL-EBI
WormBase CE00461 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245332_AT fumarylacetoacetate hydrolase family protein at
CANINE:1584509_AT similar to fumarylacetoacetate hydrolase domain containing 1 isoform 2 cfa
CANINE_2:CFA.11037.1.A1_AT similar to fumarylacetoacetate hydrolase domain containing 1 isoform 2 cfa
CANINE_2:CFA.13807.1.A1_X_AT similar to fumarylacetoacetate hydrolase domain containing 1 isoform 2 cfa
CANINE_2:CFAAFFX.29794.1.S1_AT similar to fumarylacetoacetate hydrolase domain containing 1 isoform 2 cfa
DROSOPHILA_2:1631227_AT dm
DROSGENOME1:150297_AT dm
CHICKEN:GGA.5301.1.S1_AT similar to RIKEN cDNA 1110025H10 gga
HU35KSUBA:RC_AA450373_AT fumarylacetoacetate hydrolase domain containing 1 hs
U133_X3P:HS.322482.2.S1_3P_X_AT fumarylacetoacetate hydrolase domain containing 1 hs
U133_X3P:HS.322482.1.A1_3P_S_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U133_PLUS_2:226767_S_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U133B:226767_S_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U133_PLUS_2:227960_S_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U133B:227960_S_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U95B:50252_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U95E:91547_AT fumarylacetoacetate hydrolase domain containing 1 hs
HG-U95D:83519_AT Fumarylacetoacetate hydrolase domain containing 1 hs
MU11KSUBA:AA071850_S_AT fumarylacetoacetate hydrolase domain containing 1 mm
MG-U74AV2:99658_F_AT fumarylacetoacetate hydrolase domain containing 1 mm
MG-U74AV2:99659_R_AT fumarylacetoacetate hydrolase domain containing 1 mm
MOE430A:1419547_AT fumarylacetoacetate hydrolase domain containing 1 mm
MOUSE430A_2:1419547_AT fumarylacetoacetate hydrolase domain containing 1 mm
MOUSE430_2:1419547_AT fumarylacetoacetate hydrolase domain containing 1 mm
RG-U34C:RC_AI145870_AT similar to RIKEN cDNA 1110025H10 (predicted) rn
RAE230A:1372676_AT similar to RIKEN cDNA 1110025H10 (predicted) rn
RAT230_2:1372676_AT similar to RIKEN cDNA 1110025H10 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28230 Hypothetical protein ZK688.3 [Caenorhabditis elegans] ref|NP_498715.1| ZK688.3 [Caenorhabditis elegans] sp|P34673|YO23_CAEEL Hypothetical protein ZK688.3 in chromosome III 1.0E-121
blast AAA28230 Hypothetical protein ZK688.3 [Caenorhabditis elegans] ref|NP_498715.1| ZK688.3 [Caenorhabditis elegans] sp|P34673|YO23_CAEEL Hypothetical protein ZK688.3 in chromosome III 1.0E-120
blast CAE66883 Hypothetical protein CBG12264 [Caenorhabditis briggsae] 1.0E-108
blast XP_786493 PREDICTED: similar to Fumarylacetoacetate hydrolase domain containing protein 1 [Strongylocentrotus purpuratus] 5.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR002529 EMBL-EBI Fumarylacetoacetate (FAA) hydrolase 2.6E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043642 2 213-235,275-297
Sequence
Target Sequence 
>C. ELEGANS:176155_AT
gatcgtttgtgtcggacgcaactacaaagatcacgctttagaattaggaaatgccatccc
aaagaaaccaatgctttttgtaaaaactgtcaactcattcatagtagaaggagaaccaat
tgttgcaccacccggttgccagaatctgcatcaggaagtggaattaggagttgtcattag
taaaaaagcatcgcgtatttcaaaatcagatgctatggattacattggaggttacactgt
cgcattggacatgaccgcccgtgatttccaagatgaagccaaaaaagctggagctccgtg
gtttctagcaaaatcgttcgatggatcttgtccaatcggaggatttcttccggtttcgga
tattcccaatccacacgacgtggaacttttctgcaaaataaacggaaaagatcaacagag
atgtcgtaccgatgtgatgatcttcgatatcccaacccttttggagtacacaacacaatt
cttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTTTGTGTCGGACGCAACTAC 451 417 51 Antisense
AGGAGAACCAATTGTTGCACCACCC 183 55 159 Antisense
ACCCGGTTGCCAGAATCTGCATCAG 675 89 180 Antisense
TGGAGGTTACACTGTCGCATTGGAC 604 549 276 Antisense
ACCGCCCGTGATTTCCAAGATGAAG 560 89 304 Antisense
AAAAGCTGGAGCTCCGTGGTTTCTA 431 131 333 Antisense
GGTTTCGGATATTCCCAATCCACAC 583 505 402 Antisense
CACACGACGTGGAACTTTTCTGCAA 414 195 422 Antisense
GATGTGATGATCTTCGATATCCCAA 351 409 481 Antisense
GATATCCCAACCCTTTTGGAGTACA 140 427 496 Antisense
GGAGTACACAACACAATTCTTCACA 532 517 513 Antisense
Sequence Source Affymetrix Proprietary Database