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[176154_at]

Description F42A9.7 /REP_DB=WormBase Gene ID /WP=CE25889 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-3)
A 		5.9
(3)
A 		4.7
(1.3)
A 		2.8
(-1.4)
A 		4
B 6.5
(2.6)
A 		2
(-3)
A 		4.4
(0)
A 		6.8
(3)
A 		5
C 1.4
(-3)
A 		2.5
(-1.8)
A 		7.1
(3)
A 		2.8
(-1.5)
A 		6
avr 3.2
(-3) 		3.5
(-2.2) 		5.4
(3) 		4.1
(-0.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 2.5
(-3)
A 		3.6
(-3)
A 		1.9
(-3)
A 		2.3
(-3)
A 		109.9
(-0.3)
A 		240.1
(3)
A 		238
B 2.2
(-3)
A 		1.8
(-3)
A 		2.2
(-3)
A 		2.4
(-3)
A 		70.3
(-0)
A 		140.7
(3)
A 		139
C 2.1
(-3)
A 		4
(-2.9)
A 		2.4
(-3)
A 		5
(-2.9)
A 		99.4
(0.6)
A 		166.5
(3)
M 		164
avr 2.3
(-3) 		3.1
(-3) 		2.2
(-3) 		3.2
(-3) 		93.2
(0) 		182.4
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.6
(-1.7)
A 		1.3
(3)
A 		1.2
(2.3)
A 		0.4
(-3)
A 		1
B 2.1
(3)
A 		0.5
(-3)
A 		1
(-1.1)
A 		1.5
(0.8)
A 		2
C 0.5
(-3)
A 		0.7
(-2.4)
A 		2.5
(3)
A 		0.5
(-3)
A 		2
avr 1.1
(-0.8) 		0.8
(-3) 		1.6
(3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.3
(-2.9)
A 		0.4
(-3)
A 		0.6
(-3)
A 		33.2
(0.4)
A 		58.5
(3)
A 		58
B 0.8
(-3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		0.6
(-3)
A 		28.6
(0.2)
A 		52.5
(3)
A 		52
C 0.8
(-3)
A 		1.2
(-2.9)
A 		0.6
(-3)
A 		1
(-3)
A 		32.2
(0.4)
A 		55.7
(3)
M 		55
avr 0.7
(-3) 		1
(-2.9) 		0.5
(-3) 		0.7
(-3) 		31.3
(0.4) 		55.6
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9934
Sequence Type Exemplar sequence
Representative Public ID F42A9.7 NCBI
Target Description F42A9.7 /REP_DB=WormBase Gene ID /WP=CE25889 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069071 NCBI Caenorhabditis elegans F42A9.7 (F42A9.7) mRNA, complete cds. 11/11 None
SNAP00000042134 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8616041:8617061:-1 11/11 None
GENEFINDER00000042146 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8616041:8617061:-1 11/11 None
F42A9.7 ENSEMBL cdna:known chromosome:CEL140:IV:8616041:8617061:-1 gene:F42A9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8616046-8617067(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A9.7
Entrez Gene 185655 Entrez gene
SwissProt Q95ZT8 EMBL-EBI
WormBase CE25889 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84529 Hypothetical protein F42A9.7 [Caenorhabditis elegans] ref|NP_501472.1| F42A9.7 [Caenorhabditis elegans] 4.0E-89
blast CAE66998 Hypothetical protein CBG12397 [Caenorhabditis briggsae] 3.0E-13
blast CAE69190 Hypothetical protein CBG15225 [Caenorhabditis briggsae] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.3E-31
Sequence
Target Sequence 
>C. ELEGANS:176154_AT
gaaatcttccaattccaccaaaactacaggatctaaatctagcaagtcgagcagatctca
acgctctaacaagtcaaacaagatggttactaacccaaaagggttcagtgatagaaagat
acgtgcagcaattcttgccgaccagaaagccgctgcagatgccgtgaagtctcaaaaact
ctcatcaaacaactcatcggaaaagcaattgaatgctcataatgacaacaaaatctcgta
tgttaatgttcgtgtgattcctcatgaattaatctttcctccaattggtggcatgaagca
tgttcgtgtgaagaattcgactggaaaacctattgcctacatggcaaaatgctcggataa
cattttgttcagaatcaatccagtttatggaattattgataccgatcgtgatgctcaaat
taatattttgagagaaaacggagctgcaaaacatgataaactcgtcattgtcacaactgt
tcatcatgatgctaacaagactgctcagcacactttttctcaactcaatcagggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCTTCCAATTCCACCAAAACT 344 359 231 Antisense
GCAGATCTCAACGCTCTAACAAGTC 42 313 281 Antisense
GCAATTCTTGCCGACCAGAAAGCCG 147 323 358 Antisense
CCGCTGCAGATGCCGTGAAGTCTCA 170 263 380 Antisense
AAACTCTCATCAAACAACTCATCGG 648 127 406 Antisense
AATGTTCGTGTGATTCCTCATGAAT 237 165 475 Antisense
AATCTTTCCTCCAATTGGTGGCATG 298 169 501 Antisense
GACTGGAAAACCTATTGCCTACATG 626 375 549 Antisense
GATAAACTCGTCATTGTCACAACTG 410 423 685 Antisense
CAAGACTGCTCAGCACACTTTTTCT 413 185 726 Antisense
CACTTTTTCTCAACTCAATCAGGGC 402 197 741 Antisense
Sequence Source Affymetrix Proprietary Database