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[176152_at]

Description C08C3.2 /REP_DB=WormBase Gene ID /WP=CE00067 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 12      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 68.9
(-0.8)
P 		65.6
(-1)
A 		36.2
(-3)
A 		124.3
(3)
P 		88
B 61.8
(0.2)
A 		26.4
(-3)
A 		40.5
(-1.7)
A 		92.5
(3)
P 		66
C 63
(-1.7)
A 		43.2
(-2.9)
A 		40.8
(-3)
A 		146.9
(3)
A 		106
avr 64.6
(-1.1) 		45.1
(-2.6) 		39.2
(-3) 		121.2
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 68.5
(-2)
A 		20.1
(-3)
A 		68.8
(-2)
A 		123.5
(-0.9)
A 		187.8
(0.4)
P 		319.1
(3)
P 		299
B 63
(-2.7)
A 		49.7
(-3)
A 		75.6
(-2.4)
P 		143.5
(-0.7)
A 		153
(-0.5)
P 		295.1
(3)
P 		245
C 62.6
(-3)
A 		65.5
(-2.9)
A 		63.3
(-3)
A 		175.3
(0.4)
A 		223.2
(1.8)
P 		264
(3)
P 		201
avr 64.7
(-2.5) 		45.1
(-3) 		69.2
(-2.4) 		147.4
(-0.5) 		188
(0.5) 		292.7
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 25.1
(3)
P 		14.2
(-1.2)
A 		9.5
(-3)
A 		18.2
(0.3)
P 		16
B 19.7
(3)
A 		6.5
(-3)
A 		9.4
(-1.7)
A 		19.7
(3)
P 		13
C 20.9
(1.1)
A 		12.4
(-3)
A 		14.2
(-2.1)
A 		24.8
(3)
A 		12
avr 21.9
(3) 		11
(-3) 		11
(-3) 		20.9
(2.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 12.6
(-2.5)
A 		7.2
(-3)
A 		15
(-2.3)
A 		31.3
(-0.9)
A 		56.7
(1.2)
P 		77.7
(3)
P 		71
B 21.9
(-2.7)
A 		16.6
(-3)
A 		18.4
(-2.9)
P 		38
(-1.6)
A 		62.2
(-0.1)
P 		110
(3)
P 		93
C 23.2
(-2.4)
A 		20
(-2.7)
A 		16.1
(-3)
A 		35.2
(-1.4)
A 		72.2
(1.7)
P 		88.4
(3)
P 		72
avr 19.2
(-2.6) 		14.6
(-3) 		16.5
(-2.9) 		34.8
(-1.4) 		63.7
(0.8) 		92
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6648
Sequence Type Exemplar sequence
Representative Public ID C08C3.2 NCBI
Target Description C08C3.2 /REP_DB=WormBase Gene ID /WP=CE00067 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066293 NCBI Caenorhabditis elegans C08C3.2 (C08C3.2) mRNA, complete cds. 11/11 None
SNAP00000010129 ENSEMBL cdna:SNAP chromosome:CEL140:III:7775005:7775937:-1 11/11 None
GENEFINDER00000010134 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7775005:7775937:-1 11/11 None
C08C3.2 ENSEMBL cdna:known chromosome:CEL140:III:7774969:7775937:-1 gene:C08C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7774966-7775935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-15
Ensembl C08C3.2
Entrez Gene 182393 Entrez gene
WormBase CE39087 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498694 C08C3.2 [Caenorhabditis elegans] sp|P34324|YKV2_CAEEL Hypothetical protein C08C3.2 in chromosome III 1.0E-156
blast AAA27946 Hypothetical protein C08C3.2 [Caenorhabditis elegans] 1.0E-149
blast NP_498694 C08C3.2 [Caenorhabditis elegans] sp|P34324|YKV2_CAEEL Hypothetical protein C08C3.2 in chromosome III 1.0E-149
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 5.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.0E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.6E-40
Sequence
Target Sequence 
>C. ELEGANS:176152_AT
acagtcgacgccgaattcagcttaaaaatagcttcatcatcaggaagttatgcaatgaaa
ttccaaaagggatgtttcgatggatttggactgggatggaatgattttgtcagttgggac
tcattgacagaagattttctatacgataatagttttactattgaagcatgtgtgaagatc
acaaaaatgacaggattctcgaaagatgtgctcagaagcttcgatgaatcagaaaaaaga
ttttccgatgtgatccttgtagttggagacgagaagttttatgttttgaaactattcctg
gcgtctcattcttcatatttcaatgcactttttcttggaaaattcaaagaagccgatcaa
tcagaggttacactccaaaacatcgatccgaccgattttcagagccttttggaggttcta
tatggagaacctgcgattgatgatggtaccatcgatggagttcttctacttgcccacatg
ctcgatgttaccttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTCGACGCCGAATTCAGCTTAA 450 107 208 Antisense
TTCGATGGATTTGGACTGGGATGGA 48 697 283 Antisense
GATTTTCCGATGTGATCCTTGTAGT 319 429 446 Antisense
TTGAAACTATTCCTGGCGTCTCATT 588 703 493 Antisense
ATATTTCAATGCACTTTTTCTTGGA 153 19 522 Antisense
AGCCGATCAATCAGAGGTTACACTC 644 83 558 Antisense
TACACTCCAAAACATCGATCCGACC 142 639 576 Antisense
CCGACCGATTTTCAGAGCCTTTTGG 516 261 595 Antisense
TATGGAGAACCTGCGATTGATGATG 549 655 628 Antisense
TCGATGGAGTTCTTCTACTTGCCCA 613 601 659 Antisense
CCACATGCTCGATGTTACCTTGGCA 445 275 681 Antisense
Sequence Source Affymetrix Proprietary Database