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[176151_at]

Description ZK688.5 /REP_DB=WormBase Gene ID /WP=CE00463 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 65      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 82      6grp_total > 55      4grp_total > 02      6grp_highest_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1095
1 2 3 4 range
A 284.2
(-2.4)
P 		331.4
(-2.1)
P 		189.8
(-3)
P 		1160.5
(3)
P 		971
B 263.2
(-3)
P 		275.2
(-2.9)
P 		280
(-2.9)
P 		972.4
(3)
P 		709
C 357.6
(-2.3)
P 		280.9
(-2.7)
P 		227.4
(-3)
P 		1284.4
(3)
P 		1057
avr 301.7
(-2.5) 		295.8
(-2.6) 		232.4
(-3) 		1139.1
(3) 		907

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 386
(1.1)
P 		270.9
(-3)
P 		440.9
(3)
P 		378.5
(0.8)
P 		271
(-3)
P 		332.4
(-0.8)
P 		170
B 338
(1.9)
P 		247.8
(-3)
P 		343.4
(2.2)
P 		271.9
(-1.7)
P 		324.4
(1.2)
P 		357.7
(3)
P 		110
C 332.6
(2.2)
P 		304.3
(0.3)
P 		256.9
(-3)
P 		292.4
(-0.5)
P 		316.1
(1.1)
P 		343.8
(3)
P 		87
avr 352.2
(3) 		274.3
(-3) 		347.1
(2.6) 		314.3
(0.1) 		303.8
(-0.7) 		344.6
(2.4) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 103.5
(-0.3)
P 		71.9
(-1.9)
P 		49.6
(-3)
P 		169.9
(3)
P 		120
B 83.9
(-2.2)
P 		68
(-2.9)
P 		64.9
(-3)
P 		207.2
(3)
P 		142
C 118.4
(-1.3)
P 		80.8
(-2.9)
P 		79.3
(-3)
P 		216.6
(3)
P 		137
avr 101.9
(-1.3) 		73.6
(-2.6) 		64.6
(-3) 		197.9
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 71.2
(-3)
P 		96.4
(3)
P 		96
(2.9)
P 		96
(2.9)
P 		81.8
(-0.5)
P 		80.9
(-0.7)
P 		25
B 117.6
(1.5)
P 		82.5
(-2)
P 		83.4
(-1.9)
P 		72
(-3)
P 		131.8
(2.8)
P 		133.4
(3)
P 		61
C 123.3
(3)
P 		92.8
(0.2)
P 		65.4
(-2.4)
P 		58.8
(-3)
P 		102.3
(1)
P 		115.1
(2.2)
P 		65
avr 104
(2) 		90.6
(-0.4) 		81.6
(-1.9) 		75.6
(-3) 		105.3
(2.2) 		109.8
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6787
Sequence Type Exemplar sequence
Representative Public ID ZK688.5 NCBI
Target Description ZK688.5 /REP_DB=WormBase Gene ID /WP=CE00463 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066312 NCBI Caenorhabditis elegans ZK688.9 (ZK688.9) mRNA, complete cds. 11/11 A 
SNAP00000043624 ENSEMBL cdna:SNAP chromosome:CEL140:III:7881163:7884063:-1 10/11 None
ZK688.9 ENSEMBL cdna:known chromosome:CEL140:III:7881096:7884878:-1 gene:ZK688.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043637 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043646 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7882728-7891482(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK688.9
Entrez Gene 176106 Entrez gene
SwissProt P34274 EMBL-EBI
WormBase CE29650 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253287_AT TIP41-like family protein at
CANINE:1602298_AT similar to TIP41, TOR signalling pathway regulator-like cfa
CANINE_2:CFA.16837.1.S1_AT similar to TIP41, TOR signalling pathway regulator-like cfa
CANINE_2:CFAAFFX.23548.1.S1_AT similar to TIP41, TOR signalling pathway regulator-like cfa
DROSOPHILA_2:1631088_AT dm
DROSGENOME1:153439_AT dm
CHICKEN:GGA.13163.1.S1_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) gga
CHICKEN:GGA.8287.1.S1_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) gga
U133_X3P:HS2.137576.2.S1_3P_S_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:HS2.137576.1.S1_3P_S_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:HS.137576.0.A1_3P_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:HS.137576.0.A1_3P_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:1554351_3P_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:1553677_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:1554351_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133A_2:214773_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:214773_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133A:214773_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:228619_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133B:228619_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U95AV2:33035_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U95E:88770_R_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U95E:70787_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
MOUSE430_2:1451587_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOE430A:1451587_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOUSE430A_2:1451587_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MU11KSUBA:AA624026_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MG-U74AV2:104052_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOE430A:1433912_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOUSE430A_2:1433912_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOUSE430_2:1433912_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOE430B:1458522_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MOUSE430_2:1458522_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MU19KSUBB:TC33388_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MU19KSUBC:TC37243_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MU19KSUBC:TC37243_G_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
YEAST_2:1776135_AT Protein that interacts physically and genetically with Tap42p, which regulates protein phosphatase 2A; component of the TOR (target of rapamycin) signaling pathway Sc
Protein Similarities
Method ID Description E-Value
blast NP_498713 ZK688.9 [Caenorhabditis elegans] sp|P34274|YO29_CAEEL Hypothetical protein ZK688.9 in chromosome III 0.0
blast AAL00884 Hypothetical protein ZK688.9 [Caenorhabditis elegans] 0.0
blast CAE66885 Hypothetical protein CBG12266 [Caenorhabditis briggsae] 4.0E-55
blast CAE66885 Hypothetical protein CBG12266 [Caenorhabditis briggsae] 6.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR007303 EMBL-EBI TIP41-like protein 1.2E-55
Pfam IPR007303 EMBL-EBI TIP41-like protein 1.2E-55
Sequence
Target Sequence 
>C. ELEGANS:176151_AT
ggatcttgttaaaatgcgtggctataaaaggaacataggaagtcgaaatcaagaaatgac
catgaaaaatgttgaaaaaaaggtagagcaaatgggagcaaaaaacgaagaaatgttctc
catgatttcaaaaattatgcaaaaaccaaattcaacagggcatcttcaatgggattcaca
aactcttgccgatttaatgaacaaatcagatagttttgatgatgatcaagaatcattaaa
tatgccgcgctcttctgaatcttctgccatgtcagttcgtaatagaacgttagaacgcca
atcggaaccggttcggaaatctccaaaagcagcaccaaaagttaagaacgaggcaggaat
aacagcttcttatgtcacttcagaaatgtcagatcggagaagcattgacgaggtgatggt
gcgagctgcaaaaaacgcaaaacgagaggaaaagttcgatctgggattttttaaattcat
ttcactggctggacacattttggagagctcctgcaagcattcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTTGTTAAAATGCGTGGCTAT 301 511 4845 Antisense
AACAGGGCATCTTCAATGGGATTCA 470 137 4998 Antisense
TGGGATTCACAAACTCTTGCCGATT 45 553 5014 Antisense
TTAAATATGCCGCGCTCTTCTGAAT 117 685 5080 Antisense
GAATCTTCTGCCATGTCAGTTCGTA 200 329 5101 Antisense
TAGAACGCCAATCGGAACCGGTTCG 659 569 5135 Antisense
GGAAATCTCCAAAAGCAGCACCAAA 418 527 5159 Antisense
TAACAGCTTCTTATGTCACTTCAGA 665 639 5204 Antisense
GACGAGGTGATGGTGCGAGCTGCAA 137 379 5251 Antisense
AATTCATTTCACTGGCTGGACACAT 182 177 5318 Antisense
GGAGAGCTCCTGCAAGCATTCAGAA 364 519 5346 Antisense
Sequence Source Affymetrix Proprietary Database