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[176149_at]

Description C05D10.5 /REP_DB=WormBase Gene ID /WP=CE24784 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 44      6grp_total > 92      4grp_total > 51      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 305.1
(0)
P 		449.1
(3)
P 		330.2
(0.5)
P 		158.4
(-3)
A 		291
B 379.1
(0.9)
P 		499.1
(3)
P 		338.9
(0.1)
P 		164.1
(-3)
M 		335
C 320.5
(-0.3)
P 		493.2
(3)
P 		345.4
(0.2)
P 		175.7
(-3)
P 		318
avr 334.9
(0.2) 		480.5
(3) 		338.2
(0.3) 		166.1
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 210.4
(-3)
A 		385.4
(3)
P 		239.7
(-2)
P 		372.5
(2.6)
P 		266.6
(-1.1)
A 		212.9
(-2.9)
A 		175
B 224.4
(-0.5)
P 		232.2
(-0.3)
A 		192.1
(-1.5)
A 		213
(-0.9)
P 		338.1
(3)
P 		144.2
(-3)
P 		194
C 368.6
(3)
P 		295.3
(1.1)
A 		293.5
(1)
P 		324.2
(1.8)
M 		350.9
(2.5)
P 		141.2
(-3)
A 		227
avr 267.8
(1) 		304.3
(2.4) 		241.8
(-0) 		303.2
(2.4) 		318.5
(3) 		166.1
(-3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 111.1
(3)
P 		97.5
(2.1)
P 		86.3
(1.3)
P 		23.2
(-3)
A 		88
B 120.9
(2.8)
P 		123.3
(3)
P 		78.5
(-0)
P 		35
(-3)
M 		88
C 106.1
(1.1)
P 		141.8
(3)
P 		120.4
(1.9)
P 		29.6
(-3)
P 		112
avr 112.7
(2.5) 		120.9
(3) 		95.1
(1.3) 		29.3
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 38.8
(-3)
A 		137.1
(3)
P 		52.2
(-2.2)
P 		94.5
(0.4)
P 		80.4
(-0.5)
A 		51.8
(-2.2)
A 		98
B 78.1
(-0.9)
P 		77.3
(-1)
A 		46.7
(-3)
A 		56.4
(-2.4)
P 		137.4
(3)
P 		53.8
(-2.5)
P 		91
C 136.6
(3)
P 		90.1
(-0.1)
A 		74.7
(-1.2)
P 		65.2
(-1.8)
M 		113.6
(1.5)
P 		47.3
(-3)
A 		89
avr 84.5
(0.4) 		101.5
(2.1) 		57.9
(-2.3) 		72
(-0.9) 		110.5
(3) 		51
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6040
Sequence Type Exemplar sequence
Representative Public ID C05D10.5 NCBI
Target Description C05D10.5 /REP_DB=WormBase Gene ID /WP=CE24784 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065923(11), NM_065922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065923 NCBI Caenorhabditis elegans C05D10.4b (C05D10.4) mRNA, complete cds. 11/11 A 
NM_065922 NCBI Caenorhabditis elegans C05D10.4a (C05D10.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000011505 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6094029:6095977:-1 9/11 None
C05D10.4b ENSEMBL cdna:known chromosome:CEL140:III:6088626:6102681:-1 gene:C05D10.4 11/11 A 
C05D10.4a ENSEMBL cdna:known chromosome:CEL140:III:6088847:6102802:-1 gene:C05D10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011489 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175860 3 2 NM_065922 176149_at (11)
NM_065923 175264_at (11), 176149_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6094556-6102680(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15545 Hypothetical protein C05D10.4b [Caenorhabditis elegans] ref|NP_498324.2| C05D10.4b [Caenorhabditis elegans] sp|Q11181|YPC4_CAEEL Hypothetical protein C05D10.4 in chromosome III 0.0
blast AAM15544 Hypothetical protein C05D10.4a [Caenorhabditis elegans] ref|NP_498323.2| C05D10.4a [Caenorhabditis elegans] 0.0
blast AAM15546 Hypothetical protein C05D10.4c [Caenorhabditis elegans] ref|NP_741170.1| C05D10.4c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:176149_AT
acggcaagaccatatgagccaccaccggattatcctatgatagagcagagatggccgaca
actgtcaggaatagctcaattcatccacacgtttcttccgctcatccgtcttatagaagt
cactctattgacgctgctgttaacagaagttcatccgcctgctttcattcaccacatcgt
ccatccttcccgtctcgaggtcttcaaaaatacgactatccaatttgtggagtatcgcct
tccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCAAGACCATATGAGCCACCAC 525 93 16 Antisense
AGCCACCACCGGATTATCCTATGAT 26 83 32 Antisense
GATAGAGCAGAGATGGCCGACAACT 179 423 54 Antisense
GGCCGACAACTGTCAGGAATAGCTC 250 543 68 Antisense
AGGAATAGCTCAATTCATCCACACG 338 55 82 Antisense
TTCCGCTCATCCGTCTTATAGAAGT 140 699 111 Antisense
GAAGTCACTCTATTGACGCTGCTGT 173 337 131 Antisense
TTAACAGAAGTTCATCCGCCTGCTT 84 683 155 Antisense
TTCCCGTCTCGAGGTCTTCAAAAAT 7 697 202 Antisense
AAAATACGACTATCCAATTTGTGGA 449 133 222 Antisense
AATTTGTGGAGTATCGCCTTCCAGA 651 173 237 Antisense
Sequence Source Affymetrix Proprietary Database