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[176144_at]

Description Y52E8A.1 /REP_DB=WormBase Gene ID /WP=CE25391 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 38.3
(1.6)
A 		48.1
(3)
A 		20.2
(-0.9)
A 		4.7
(-3)
A 		43
B 20.5
(-1.7)
A 		41.7
(0.7)
A 		61.2
(3)
A 		9.4
(-3)
A 		52
C 17.7
(-3)
A 		62.4
(3)
A 		26.7
(-1.8)
A 		38.9
(-0.2)
A 		45
avr 25.5
(-1.6) 		50.7
(3) 		36
(0.3) 		17.7
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10.9
(-2.3)
A 		30.1
(3)
A 		25.2
(1.6)
A 		8.5
(-3)
A 		19.9
(0.2)
A 		29.5
(2.8)
A 		22
B 15.5
(-2.3)
A 		10
(-3)
A 		22.4
(-1.4)
A 		9.7
(-3)
A 		56.9
(3)
A 		30.4
(-0.4)
A 		47
C 52.4
(3)
A 		41.5
(1.7)
A 		2.9
(-3)
A 		10.8
(-2)
A 		39.8
(1.5)
A 		7.4
(-2.5)
A 		50
avr 26.3
(0.4) 		27.2
(0.6) 		16.8
(-1.5) 		9.7
(-3) 		38.9
(3) 		22.4
(-0.4) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.9
(3)
A 		10.4
(1.4)
A 		5.3
(-0.9)
A 		0.7
(-3)
A 		13
B 6.5
(-0.8)
A 		10.3
(1.1)
A 		14.2
(3)
A 		2
(-3)
A 		12
C 5.9
(-3)
A 		17.9
(3)
A 		9.3
(-1.3)
A 		6.6
(-2.7)
A 		12
avr 8.8
(0.5) 		12.9
(3) 		9.6
(1) 		3.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2
(-3)
A 		10.7
(3)
A 		5.5
(-0.6)
A 		2.1
(-2.9)
A 		6
(-0.2)
A 		7.2
(0.6)
A 		9
B 5.4
(-2.2)
A 		3.3
(-2.8)
A 		5.4
(-2.2)
A 		2.6
(-3)
A 		23.1
(3)
A 		11.3
(-0.5)
A 		21
C 19.4
(3)
A 		12.7
(0.9)
A 		0.7
(-3)
A 		2.2
(-2.5)
A 		12.9
(0.9)
A 		2.5
(-2.4)
A 		19
avr 8.9
(0.4) 		8.9
(0.4) 		3.9
(-2.2) 		2.3
(-3) 		14
(3) 		7
(-0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5755
Sequence Type Exemplar sequence
Representative Public ID Y52E8A.1 NCBI
Target Description Y52E8A.1 /REP_DB=WormBase Gene ID /WP=CE25391 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062360 NCBI Caenorhabditis elegans Y52E8A.1 (Y52E8A.1) mRNA, complete cds. 11/11 None
Y52E8A.1 ENSEMBL cdna:known chromosome:CEL140:II:4321655:4322549:1 gene:Y52E8A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4321653-4322548(+) 90.75 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52E8A.1
Entrez Gene 190186 Entrez gene
SwissProt Q9N3H5 EMBL-EBI
WormBase CE25391 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59526 Hypothetical protein Y52E8A.1 [Caenorhabditis elegans] ref|NP_494761.1| Y52E8A.1 [Caenorhabditis elegans] 1.0E-108
blast AAF39890 Hypothetical protein H20J04.4 [Caenorhabditis elegans] ref|NP_494765.2| H20J04.4 [Caenorhabditis elegans] 4.0E-12
blast CAE60124 Hypothetical protein CBG03667 [Caenorhabditis briggsae] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:176144_AT
tacagccaaaatcatgccagacgcaattctaccggacaatgatgatgatttggagatgaa
tgaagaacaggaagagcctcctagctcaggaaacctcggcgtgtgctcctggatcaacca
acagctcgaaactatgcaaattaaaactgcgacgccggttcaggcggcttgtattccaaa
aattctcgaaggaagcgaggaaccggagccggtcccggagcatgaaattcttactgttgt
aattaacaagacatccagtcaacattttggatgccatattacaatctcaaatggcatcgc
caaggttctttcggttattccaggatcgccggtagatgaagctcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGCCAAAATCATGCCAGACGCA 419 643 171 Antisense
CCAGACGCAATTCTACCGGACAATG 50 273 187 Antisense
GAACAGGAAGAGCCTCCTAGCTCAG 685 351 235 Antisense
CTAGCTCAGGAAACCTCGGCGTGTG 12 225 251 Antisense
GGATCAACCAACAGCTCGAAACTAT 11 511 281 Antisense
AAAACTGCGACGCCGGTTCAGGCGG 452 129 313 Antisense
GAAGGAAGCGAGGAACCGGAGCCGG 420 319 358 Antisense
GAGCCGGTCCCGGAGCATGAAATTC 110 385 376 Antisense
CATCGCCAAGGTTCTTTCGGTTATT 254 209 465 Antisense
TTCGGTTATTCCAGGATCGCCGGTA 626 687 480 Antisense
GGATCGCCGGTAGATGAAGCTCTTT 410 513 493 Antisense
Sequence Source Affymetrix Proprietary Database