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[176143_at] 7TM chemoreceptor, srw family

Description Y52E8A.5 /REP_DB=WormBase Gene ID /WP=CE26157 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 34      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4
(-2.9)
A 		38.5
(3)
A 		8.3
(-2.2)
A 		3.4
(-3)
A 		35
B 3.4
(-3)
A 		17.2
(3)
A 		14.3
(1.7)
A 		4
(-2.7)
A 		14
C 4.2
(-3)
A 		41.4
(2)
A 		12.1
(-1.9)
A 		48.5
(3)
A 		44
avr 3.9
(-3) 		32.4
(3) 		11.6
(-1.4) 		18.6
(0.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.1
(2.6)
A 		7.8
(-0.7)
A 		3.3
(-3)
A 		6.7
(-1.2)
A 		4.1
(-2.6)
A 		14.8
(3)
A 		12
B 1.8
(-2.7)
A 		14.8
(3)
A 		1
(-3)
A 		4.4
(-1.5)
A 		4.6
(-1.4)
A 		11.1
(1.4)
A 		14
C 11
(3)
A 		4.1
(-1.1)
A 		5.9
(-0.1)
A 		6.4
(0.2)
A 		9.8
(2.3)
A 		1
(-3)
A 		10
avr 9
(3) 		8.9
(2.9) 		3.4
(-3) 		5.8
(-0.4) 		6.2
(0) 		9
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.5
(-2.2)
A 		8.4
(3)
A 		2.2
(-1.7)
A 		0.5
(-3)
A 		8
B 1.1
(-2.5)
A 		4.3
(3)
A 		3.3
(1.3)
A 		0.8
(-3)
A 		4
C 1.4
(-3)
A 		11.9
(3)
A 		4.2
(-1.4)
A 		8.2
(0.9)
A 		11
avr 1.3
(-3) 		8.2
(3) 		3.2
(-1.3) 		3.2
(-1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.6
(0.9)
A 		2.8
(1.3)
A 		0.7
(-3)
A 		1.7
(-0.9)
A 		1.3
(-1.8)
A 		3.6
(3)
A 		3
B 0.6
(-2.5)
A 		4.9
(3)
A 		0.2
(-3)
A 		1.2
(-1.7)
A 		1.9
(-0.8)
A 		4.2
(2.1)
A 		5
C 4.1
(3)
A 		1.3
(-1.4)
A 		1.5
(-1.1)
A 		1.3
(-1.4)
A 		3.2
(1.6)
A 		0.3
(-3)
A 		4
avr 2.4
(1.4) 		3
(3) 		0.8
(-3) 		1.4
(-1.4) 		2.1
(0.5) 		2.7
(2.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5383
Sequence Type Exemplar sequence
Representative Public ID Y52E8A.5 NCBI
Target Description Y52E8A.5 /REP_DB=WormBase Gene ID /WP=CE26157 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062358(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062358 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-40) (srw-40) mRNA, complete cds. 10/11 A 
GENEFINDER00000040248 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4314409:4319961:-1 11/11 None
Y52E8A.5 ENSEMBL cdna:known chromosome:CEL140:II:4314409:4316103:-1 gene:Y52E8A.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4314407-4319960(-) 74.53 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-40
Ensembl Y52E8A.5
Entrez Gene 190189 Entrez gene
SwissProt Q9N3H7 EMBL-EBI
WormBase CE33879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13749 Serpentine receptor, class w protein 40 [Caenorhabditis elegans] ref|NP_494759.2| Serpentine Receptor, class W family member (srw-40) [Caenorhabditis elegans] 1.0E-175
blast AAC71105 Hypothetical protein F31D5.2 [Caenorhabditis elegans] ref|NP_494741.2| F31D5.2 [Caenorhabditis elegans] 1.0E-174
blast CAE74273 Hypothetical protein CBG21964 [Caenorhabditis briggsae] 1.0E-156
blast AAP13749 Serpentine receptor, class w protein 40 [Caenorhabditis elegans] ref|NP_494759.2| Serpentine Receptor, class W family member (srw-40) [Caenorhabditis elegans] 1.0E-128
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 6.0E-44
blast CAE17813 Hypothetical protein F14F8.11 [Caenorhabditis elegans] ref|NP_001023799.1| Serpentine Receptor, class W family member (srw-42) [Caenorhabditis elegans] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-25
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-25
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 1.0E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494759.2 7 37-59,71-93,126-148,168-185,220-242,272-294,309-331
Y52E8A.5 7 37-59,71-93,126-148,168-185,220-242,272-294,309-331
GENEFINDER00000040248 14 13-30,50-72,79-96,100-119,139-161,176-195,227-249,264-286,298-317,406-428,448-465,500-522,552-574,589-611
Sequence
Target Sequence 
>C. ELEGANS:176143_AT
acatctattctgataacactcctgattctaccattttggtacacaagttttattaaaatt
cgggaaaatccaaaatggatttggaaaccgccttcagattgtccaggattttcgaaaaat
ttcactcaaattgtttatatagtggaaaaaattgtcattttagtcgacgtaattgtgttc
aagctattgccctcaattattctcacaataactgcaatacttcttacttttcaactgaaa
aagcaaaaaattagaagtataccagtttggaatcaacaaagtaaaattcaaacaactcga
actacaaagttggttataattgaaacagttatgtttctaatacctacattgataaaaggt
acactttatttatcaagattttttgtatataaatgcgttggcttaacagatatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCTATTCTGATAACACTCCTGA 185 107 2410 Antisense
ACACTCCTGATTCTACCATTTTGGT 176 109 2425 Antisense
TGGATTTGGAAACCGCCTTCAGATT 602 549 2485 Antisense
AACCGCCTTCAGATTGTCCAGGATT 677 145 2495 Antisense
ATTGTCATTTTAGTCGACGTAATTG 381 3 2560 Antisense
AATTGTGTTCAAGCTATTGCCCTCA 178 179 2580 Antisense
GCTATTGCCCTCAATTATTCTCACA 130 305 2592 Antisense
TTCTCACAATAACTGCAATACTTCT 360 689 2609 Antisense
TGCAATACTTCTTACTTTTCAACTG 631 575 2622 Antisense
AACAGTTATGTTTCTAATACCTACA 212 137 2733 Antisense
AATGCGTTGGCTTAACAGATATCAT 515 165 2801 Antisense
Sequence Source Affymetrix Proprietary Database