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[176142_at]

Description Y58A7A.6 /REP_DB=WormBase Gene ID /WP=CE26199 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 136.9
(3)
P 		33.5
(-1.9)
A 		9.7
(-3)
A 		124.5
(2.4)
A 		127
B 127.6
(2.9)
P 		41.8
(-2.6)
A 		34.9
(-3)
A 		129.6
(3)
P 		95
C 103.3
(-0.1)
P 		15
(-3)
A 		41.9
(-2.1)
A 		196.6
(3)
P 		182
avr 122.6
(1.6) 		30.1
(-2.9) 		28.8
(-3) 		150.2
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 171.1
(3)
P 		54.5
(-1.9)
A 		89.1
(-0.4)
P 		94
(-0.2)
P 		53
(-2)
A 		28.4
(-3)
A 		143
B 99.8
(0.9)
P 		130.8
(3)
M 		50.2
(-2.6)
A 		67.5
(-1.4)
A 		44.2
(-3)
A 		52
(-2.5)
A 		87
C 67.3
(-0.1)
A 		65.3
(-0.2)
A 		85.2
(1.1)
A 		113.8
(3)
M 		24
(-3)
A 		74
(0.3)
P 		90
avr 112.7
(3) 		83.5
(0.6) 		74.8
(-0.1) 		91.8
(1.3) 		40.4
(-3) 		51.5
(-2.1) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 49.8
(3)
P 		7.3
(-2.4)
A 		2.5
(-3)
A 		18.2
(-1)
A 		47
B 40.7
(3)
P 		10.3
(-2.6)
A 		8.1
(-3)
A 		27.6
(0.6)
P 		33
C 34.2
(3)
P 		4.3
(-3)
A 		14.6
(-0.9)
A 		33.1
(2.8)
P 		30
avr 41.6
(3) 		7.3
(-3) 		8.4
(-2.8) 		26.3
(0.3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 31.5
(3)
P 		19.4
(0)
A 		19.4
(0)
P 		23.9
(1.1)
P 		16
(-0.8)
A 		6.9
(-3)
A 		25
B 34.7
(1.3)
P 		43.6
(3)
M 		12.2
(-3)
A 		17.9
(-1.9)
A 		17.9
(-1.9)
A 		19.4
(-1.6)
A 		31
C 25
(3)
A 		19.9
(1.2)
A 		21.7
(1.8)
A 		22.9
(2.3)
M 		7.8
(-3)
A 		24.8
(2.9)
P 		17
avr 30.4
(3) 		27.6
(2) 		17.8
(-1.6) 		21.6
(-0.2) 		13.9
(-3) 		17
(-1.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15689
Sequence Type Exemplar sequence
Representative Public ID Y58A7A.6 NCBI
Target Description Y58A7A.6 /REP_DB=WormBase Gene ID /WP=CE26199 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071962
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y58A7A.6 ENSEMBL cdna:known chromosome:CEL140:V:5087573:5089290:-1 gene:Y58A7A.6 None
NM_071962 NCBI Caenorhabditis elegans Y58A7A.6 (Y58A7A.6) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5087572-5089290(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y58A7A.6
Entrez Gene 190384 Entrez gene
SwissProt Q966A3 EMBL-EBI
WormBase CE36044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84620 Hypothetical protein Y58A7A.6 [Caenorhabditis elegans] ref|NP_504363.2| Y58A7A.6 [Caenorhabditis elegans] 1.0E-122
blast CAE64068 Hypothetical protein CBG08670 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000971 EMBL-EBI Globin 2.3E-4
Sequence
Target Sequence 
>C. ELEGANS:176142_AT
aaagcttccgaataggccgcttcaaaattcatttcactttgaaaagctgccagaaaacga
tctctgcaaaatttttctcgcgcgtcgaaaaaaggcagaactacttgtctttctccgatt
actcacaaatctcaatttgcaaccgatccacttttctttcgcttcatctcttaacaccgg
cgcaaatggttcgatttctggcctctctcgggacgacaagcgaatcatcgaaacatgttg
gttcaaatgctcgcagaagcaacttagaaaatgttcatgtgacatgttttgggacattct
acacactgatgaagatatactacgactttttcgattggatcatgttgctccaaataggct
gaaggacaatgactatttcaagtcacacgcgtcgaatttggcgttggttttgaatttagt
ggtcacaaatctgcaagataatttcgatcaggctcaggatgctcttcaggctcttggata
tcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTTCCGAATAGGCCGCTTCAA 355 119 162 Antisense
CTCTGCAAAATTTTTCTCGCGCGTC 707 231 223 Antisense
AGGCAGAACTACTTGTCTTTCTCCG 181 55 254 Antisense
GTCTTTCTCCGATTACTCACAAATC 520 469 268 Antisense
ATCTCAATTTGCAACCGATCCACTT 113 33 290 Antisense
ACACCGGCGCAAATGGTTCGATTTC 619 107 335 Antisense
GTTTTGGGACATTCTACACACTGAT 126 449 447 Antisense
ACTATTTCAAGTCACACGCGTCGAA 347 95 533 Antisense
GCGTCGAATTTGGCGTTGGTTTTGA 461 291 550 Antisense
TCGATCAGGCTCAGGATGCTCTTCA 440 601 605 Antisense
TGCTCTTCAGGCTCTTGGATATCAA 145 581 621 Antisense
Sequence Source Affymetrix Proprietary Database