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[176141_s_at]

Description Y58A7A.3 /REP_DB=WormBase Gene ID /WP=CE26196 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 16      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 30      6grp_total > 25      4grp_total > 63      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 634.6
(3)
P 		162.5
(-3)
P 		408.4
(0.1)
P 		265.8
(-1.7)
P 		472
B 675.5
(3)
P 		319.6
(-2.7)
P 		528.3
(0.6)
P 		301.6
(-3)
P 		374
C 664.2
(3)
P 		206.2
(-2.4)
P 		617.8
(2.5)
P 		157.5
(-3)
P 		507
avr 658.1
(3) 		229.4
(-3) 		518.2
(1) 		241.6
(-2.8) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1285
1 2 3 4 5 6 range
A 1341.3
(3)
P 		1222.8
(2.3)
P 		639.1
(-0.9)
P 		465.3
(-1.8)
P 		257
(-3)
P 		332.1
(-2.6)
P 		1084
B 1490.9
(3)
P 		1260.5
(1.8)
P 		653.7
(-1.3)
P 		451.4
(-2.3)
P 		316.2
(-3)
P 		326.6
(-2.9)
P 		1175
C 1511.8
(3)
P 		1218.3
(1.6)
P 		639.4
(-1.1)
P 		428.8
(-2.1)
P 		226.7
(-3)
P 		347.2
(-2.4)
P 		1285
avr 1448
(3) 		1233.9
(1.9) 		644.1
(-1.1) 		448.5
(-2.1) 		266.6
(-3) 		335.3
(-2.7) 		1181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 231
(3)
P 		35.3
(-3)
P 		106.8
(-0.8)
P 		38.9
(-2.9)
P 		196
B 215.4
(3)
P 		78.9
(-2.4)
P 		122.4
(-0.7)
P 		64.3
(-3)
P 		151
C 219.9
(3)
P 		59.3
(-2)
P 		215.3
(2.9)
P 		26.6
(-3)
P 		193
avr 222.1
(3) 		57.8
(-2.5) 		148.2
(0.5) 		43.3
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 247.3
(-0.2)
P 		434.9
(3)
P 		139.2
(-2)
P 		118
(-2.3)
P 		77.6
(-3)
P 		80.8
(-2.9)
P 		357
B 518.7
(3)
P 		419.6
(1.5)
P 		158.7
(-2.4)
P 		119.6
(-3)
P 		128.5
(-2.9)
P 		121.8
(-3)
P 		399
C 560.4
(3)
P 		371.7
(0.7)
P 		162.8
(-1.9)
P 		86.2
(-2.8)
P 		73.4
(-3)
P 		116.2
(-2.5)
P 		487
avr 442.1
(3) 		408.7
(2.4) 		153.6
(-2) 		107.9
(-2.7) 		93.2
(-3) 		106.3
(-2.8) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176141_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15350
Sequence Type Exemplar sequence
Representative Public ID Y58A7A.3 NCBI
Target Description Y58A7A.3 /REP_DB=WormBase Gene ID /WP=CE26196 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071959 NCBI Caenorhabditis elegans Y58A7A.3 (Y58A7A.3) mRNA, complete cds. 11/11 None
SNAP00000010494 ENSEMBL cdna:SNAP chromosome:CEL140:V:5077737:5080637:-1 11/11 None
GENEFINDER00000010503 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5077737:5080894:-1 11/11 None
Y58A7A.3 ENSEMBL cdna:known chromosome:CEL140:V:5077680:5080709:-1 gene:Y58A7A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5077736-5080637(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y58A7A.3
Entrez Gene 178896 Entrez gene
SwissProt Q966A6 EMBL-EBI
WormBase CE26196 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84617 Hypothetical protein Y58A7A.3 [Caenorhabditis elegans] ref|NP_504360.1| Y58A7A.3 [Caenorhabditis elegans] 0.0
blast AAK84618 Hypothetical protein Y58A7A.4 [Caenorhabditis elegans] ref|NP_504361.1| Y58A7A.4 [Caenorhabditis elegans] 0.0
blast CAE64066 Hypothetical protein CBG08668 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176141_S_AT
cgtaaccctgctacagttcacttgtcactgtaaaacagtatactattgtctactgccaac
caaacgtgtcaactgtcctggatgtcgagaaagtgtgaatttggagaccatgaatactat
gtacagacaattttattattcataccctccacgttatcgaaaatgggagaaacagtatca
tgaagaaaataaggatactgacagacacccatatcaaccactagcaaaggtgtgctggga
aattgacaagattccagcaatcaaagcttctgtcatagaaacatgtggagctgcaagaga
tgttcgatttgatttgaaattccgaaatcgtgtgataaagcaagaacaggttctcatcaa
gaaaagcatcctgacttccgaagtattagaaaatatattaggaactatcccttatttggt
ggaaaatgttactgcatggatgcatatgtcaaaccatcaagataagaacttgaagagcat
tctggaaagtatgattgccgaccgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTAACCCTGCTACAGTTCACTTGT 210 247 2037 Antisense
GTATACTATTGTCTACTGCCAACCA 499 453 2074 Antisense
ACTGCCAACCAAACGTGTCAACTGT 34 99 2088 Antisense
GTGTCAACTGTCCTGGATGTCGAGA 102 487 2102 Antisense
AATTTTATTATTCATACCCTCCACG 698 167 2165 Antisense
CATACCCTCCACGTTATCGAAAATG 610 213 2177 Antisense
TACTGACAGACACCCATATCAACCA 299 647 2232 Antisense
GATTCCAGCAATCAAAGCTTCTGTC 421 431 2286 Antisense
GAAAAGCATCCTGACTTCCGAAGTA 668 353 2397 Antisense
TAGGAACTATCCCTTATTTGGTGGA 605 651 2435 Antisense
GGAAAGTATGATTGCCGACCGAAAA 415 527 2520 Antisense
Sequence Source Affymetrix Proprietary Database