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[176139_at]

Description F42H10.6 /REP_DB=WormBase Gene ID /WP=CE24969 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 04      4grp_high_8_8 > 28      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 35      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 99.9
(-0.3)
P 		130.6
(3)
P 		74.3
(-3)
P 		101.7
(-0.1)
P 		56
B 78.5
(-3)
P 		152.1
(2.8)
P 		100.2
(-1.3)
P 		154.7
(3)
P 		76
C 122.8
(0.9)
P 		135.8
(3)
P 		98.3
(-3)
P 		102.4
(-2.3)
P 		38
avr 100.4
(-1.8) 		139.5
(3) 		90.9
(-3) 		119.6
(0.5) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 134.3
(2.9)
P 		102.1
(0.2)
P 		134.9
(3)
P 		113.2
(1.1)
P 		65.5
(-3)
P 		78.9
(-1.8)
P 		69
B 176.7
(2.5)
P 		87.2
(-3)
P 		184.3
(3)
P 		93
(-2.6)
P 		101.4
(-2.1)
P 		149.1
(0.8)
P 		97
C 164.9
(3)
P 		130
(0.6)
P 		86.3
(-2.3)
P 		84
(-2.5)
P 		76.7
(-3)
P 		120.3
(-0)
P 		88
avr 158.6
(3) 		106.4
(-1) 		135.2
(1.2) 		96.7
(-1.8) 		81.2
(-3) 		116.1
(-0.3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 36.4
(3)
P 		28.4
(0.8)
P 		19.4
(-1.7)
P 		14.9
(-3)
P 		22
B 25
(-2.3)
P 		37.6
(3)
P 		23.2
(-3)
P 		33
(1.1)
P 		14
C 40.7
(3)
P 		39
(2.6)
P 		34.3
(1.4)
P 		17.3
(-3)
P 		23
avr 34
(2.5) 		35
(3) 		25.6
(-1.2) 		21.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 24.8
(-1)
P 		36.3
(3)
P 		29.4
(0.6)
P 		28.7
(0.3)
P 		19.8
(-2.8)
P 		19.2
(-3)
P 		17
B 61.5
(3)
P 		29
(-2.3)
P 		44.7
(0.3)
P 		24.6
(-3)
P 		41.2
(-0.3)
P 		55.6
(2)
P 		37
C 61.1
(3)
P 		39.7
(0.1)
P 		22
(-2.3)
P 		16.9
(-3)
P 		24.8
(-1.9)
P 		40.3
(0.2)
P 		44
avr 49.1
(3) 		35
(-0.3) 		32
(-1) 		23.4
(-3) 		28.6
(-1.8) 		38.4
(0.5) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6789
Sequence Type Exemplar sequence
Representative Public ID F42H10.6 NCBI
Target Description F42H10.6 /REP_DB=WormBase Gene ID /WP=CE24969 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066471 NCBI Caenorhabditis elegans F42H10.6 (F42H10.6) mRNA, complete cds. 11/11 A 
SNAP00000027852 ENSEMBL cdna:SNAP chromosome:CEL140:III:8478365:8479348:-1 11/11 None
GENEFINDER00000027863 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8478365:8479348:-1 11/11 None
F42H10.6.2 ENSEMBL cdna:known chromosome:CEL140:III:8478314:8479372:-1 gene:F42H10.6 11/11 A 
F42H10.6.1 ENSEMBL cdna:known chromosome:CEL140:III:8478365:8480363:-1 gene:F42H10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8478359-8479343(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42H10.6
Entrez Gene 176198 Entrez gene
SwissProt P34419 EMBL-EBI
WormBase CE24969 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263661_AT thioesterase family protein at
ATGENOME1:14074_AT thioesterase family protein at
CANINE:1604881_AT similar to thioesterase superfamily member 2 cfa
CANINE:1600510_S_AT similar to thioesterase superfamily member 2 cfa
CANINE:1598962_AT similar to thioesterase superfamily member 2 cfa
CANINE:1596027_AT similar to thioesterase superfamily member 2 cfa
CANINE_2:CFA.15345.1.S1_AT similar to thioesterase superfamily member 2 cfa
CANINE_2:CFAAFFX.16310.1.S1_S_AT similar to thioesterase superfamily member 2 cfa
DROSOPHILA_2:1629685_AT dm
DROSGENOME1:148055_AT dm
CHICKEN:GGA.12114.1.S1_AT thioesterase superfamily member 2 gga
HG-U133_PLUS_2:204565_AT thioesterase superfamily member 2 hs
HG-U133A:204565_AT thioesterase superfamily member 2 hs
HG-U133A_2:204565_AT thioesterase superfamily member 2 hs
HU35KSUBB:RC_T55234_AT thioesterase superfamily member 2 hs
U133_X3P:G8923811_3P_AT thioesterase superfamily member 2 hs
HG-U95AV2:41057_AT thioesterase superfamily member 2 hs
HG-U95AV2:41058_G_AT thioesterase superfamily member 2 hs
HG-U95E:79798_AT Thioesterase superfamily member 2 hs
MU11KSUBA:AA522110_S_AT thioesterase superfamily member 2 mm
MG-U74AV2:93780_AT thioesterase superfamily member 2 mm
MOE430A:1417316_AT thioesterase superfamily member 2 mm
MOUSE430A_2:1417316_AT thioesterase superfamily member 2 mm
MOUSE430_2:1417316_AT thioesterase superfamily member 2 mm
RG-U34C:RC_AA819653_AT thioesterase superfamily member 2 (predicted) rn
RAE230A:1388497_AT thioesterase superfamily member 2 (predicted) rn
RAT230_2:1388497_AT thioesterase superfamily member 2 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast S44652 f42h10.6 protein - Caenorhabditis elegans 2.0E-99
blast AAA28024 Hypothetical protein F42H10.6 [Caenorhabditis elegans] ref|NP_498872.1| F42H10.6 [Caenorhabditis elegans] sp|P34419|YLZ6_CAEEL Hypothetical UPF0152 protein F42H10.6 in chromosome III 2.0E-90
blast S44652 f42h10.6 protein - Caenorhabditis elegans 2.0E-87
blast AAA28024 Hypothetical protein F42H10.6 [Caenorhabditis elegans] ref|NP_498872.1| F42H10.6 [Caenorhabditis elegans] sp|P34419|YLZ6_CAEEL Hypothetical UPF0152 protein F42H10.6 in chromosome III 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.4E-16
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 6.4E-17
Sequence
Target Sequence 
>C. ELEGANS:176139_AT
tccgagtcttctactgacgctgtaattgaaccgacaagcgaagagctgctcgcggagcaa
gttcgagttttcaacaaaatgaaaggttccacaaatttcaatcgagtggctgaagatgtt
tatccggtggaggtcacgaagagcaagctggtatgtgaaatggtggtgcagcatcaacac
ttgaactcaaaaggaacacttcacggcggtcaaactgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGAGTCTTCTACTGACGCTGTAA 120 595 25 Antisense
GACGCTGTAATTGAACCGACAAGCG 32 381 40 Antisense
GACAAGCGAAGAGCTGCTCGCGGAG 383 365 57 Antisense
AGGTTCCACAAATTTCAATCGAGTG 356 57 108 Antisense
GAGTGGCTGAAGATGTTTATCCGGT 292 401 128 Antisense
AAGATGTTTATCCGGTGGAGGTCAC 628 149 137 Antisense
GGAGGTCACGAAGAGCAAGCTGGTA 71 517 153 Antisense
TGGTATGTGAAATGGTGGTGCAGCA 438 551 173 Antisense
GGTGCAGCATCAACACTTGAACTCA 531 499 189 Antisense
GAACTCAAAAGGAACACTTCACGGC 395 343 207 Antisense
ACACTTCACGGCGGTCAAACTGCTA 309 109 220 Antisense
Sequence Source Affymetrix Proprietary Database