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[176137_at]

Description Y119D3B.O /REP_DB=WormBase Gene ID /WP=CE23378 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_high_8_8 > 24      6grp_highest_nonorm > 91      6grp_total > 39      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 204.8
(3)
P 		73.5
(-2.4)
P 		60.2
(-3)
P 		100.4
(-1.3)
M 		145
B 269.2
(3)
P 		70.9
(-3)
P 		146.9
(-0.7)
P 		124.4
(-1.4)
P 		198
C 233.5
(3)
P 		86.7
(-3)
P 		122.5
(-1.5)
P 		127.1
(-1.3)
P 		147
avr 235.8
(3) 		77
(-3) 		109.9
(-1.8) 		117.3
(-1.5) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 215.6
(-0.8)
P 		282.8
(3)
P 		176.5
(-3)
P 		198.5
(-1.8)
P 		242.1
(0.7)
P 		246.4
(0.9)
P 		106
B 224.1
(-2.8)
P 		266.3
(0.3)
P 		220.6
(-3)
P 		222.6
(-2.9)
P 		304.7
(3)
P 		266.1
(0.2)
P 		84
C 266.1
(3)
P 		239.3
(1.6)
P 		203.6
(-0.3)
P 		152.1
(-3)
P 		202
(-0.4)
P 		223.1
(0.7)
P 		114
avr 235.3
(0.7) 		262.8
(3) 		200.2
(-2.2) 		191.1
(-3) 		249.6
(1.9) 		245.2
(1.5) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 74.6
(3)
P 		15.9
(-2.9)
P 		15.7
(-2.9)
P 		14.7
(-3)
M 		60
B 85.9
(3)
P 		17.5
(-3)
P 		34
(-1.6)
P 		26.5
(-2.2)
P 		68
C 77.3
(3)
P 		24.9
(-2.6)
P 		42.7
(-0.7)
P 		21.4
(-3)
P 		56
avr 79.3
(3) 		19.4
(-3) 		30.8
(-1.9) 		20.9
(-2.8) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 39.7
(-2.9)
P 		100.6
(3)
P 		38.4
(-3)
P 		50.3
(-1.9)
P 		73.1
(0.3)
P 		60
(-0.9)
P 		62
B 78
(-0.9)
P 		88.6
(-0)
P 		53.6
(-3)
P 		59
(-2.5)
P 		123.8
(3)
P 		99.2
(0.9)
P 		70
C 98.6
(3)
P 		73
(0.7)
P 		51.8
(-1.1)
P 		30.6
(-3)
P 		65.4
(0.1)
P 		74.7
(0.9)
P 		68
avr 72.1
(0.7) 		87.4
(3) 		47.9
(-2.8) 		46.6
(-3) 		87.4
(3) 		78
(1.6) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19082
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.O NCBI
Target Description Y119D3B.O /REP_DB=WormBase Gene ID /WP=CE23378 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064947(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064947 NCBI Caenorhabditis elegans Y119D3B.12a (Y119D3B.12) mRNA, complete cds. 10/11 None
SNAP00000002014 ENSEMBL cdna:SNAP chromosome:CEL140:III:1177700:1212208:1 11/11 None
GENEFINDER00000002034 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1205338:1206978:1 9/11 None
Y119D3B.12a.2 ENSEMBL cdna:known chromosome:CEL140:III:1202541:1207254:1 gene:Y119D3B.12 10/11 None
Y119D3B.12a.3 ENSEMBL cdna:known chromosome:CEL140:III:1202541:1207288:1 gene:Y119D3B.12 10/11 None
Y119D3B.12a.1 ENSEMBL cdna:known chromosome:CEL140:III:1202541:1207255:1 gene:Y119D3B.12 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_181939 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002035 2/11 Cross Hyb Matching Probes None
Y119D3B.12b.1 2/11 Cross Hyb Matching Probes None
Y119D3B.12b.2 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175285 2 1 NM_064947 176137_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1202540-1205763(+) 93.53 100.0
Public Domain and Genome References
Ensembl Y119D3B.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84810 Hypothetical protein Y119D3B.12a [Caenorhabditis elegans] ref|NP_497348.2| Y119D3B.12a [Caenorhabditis elegans] 1.0E-133
blast NP_497340 Y71D11A.1 [Caenorhabditis elegans] 1.0E-131
blast AAN84810 Hypothetical protein Y119D3B.12a [Caenorhabditis elegans] ref|NP_497348.2| Y119D3B.12a [Caenorhabditis elegans] 1.0E-127
blast CAE69121 Hypothetical protein CBG15147 [Caenorhabditis briggsae] 1.0E-117
blast CAE69121 Hypothetical protein CBG15147 [Caenorhabditis briggsae] 1.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 8.1E-24
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 1.8E-14
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 2.4E-68
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 4.8E-14
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 8.1E-23
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 1.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000002014 1 217-239
Sequence
Target Sequence 
>C. ELEGANS:176137_AT
gaaatgtggacgcagcgcagaccgctgttgatcgtgcggacaaggcaaaggtggaagtcg
aagagctcactcaggaagcggaaaaattgaaatcggagaaggaaagagccataaatatgg
aggaaaatgtcactgcaggaaaccggcaaatgcaagtgtgtcaaatctgcggctgtttca
tgctccaaaacgatgctccacagcgtgtcgacgatcatttaaccggaaaattgcacattg
cctaccaacaaatctccgatacaattaaaacaatcgaactggaaatgcagacgagtcagc
agaaggctgagatgaagcgaaaacgttcgagaagccgatctacggatcgaggcgcggatc
ggaaacgatctacggagcagcaccatcacagtcatcggagcagccgggatcatagagatc
atcggcaccgggatcatcgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGTGGACGCAGCGCAGACCGC 351 361 473 Antisense
GCAGACCGCTGTTGATCGTGCGGAC 350 313 489 Antisense
TGTCAAATCTGCGGCTGTTTCATGC 314 559 631 Antisense
CAAAACGATGCTCCACAGCGTGTCG 357 191 658 Antisense
GCGTGTCGACGATCATTTAACCGGA 310 291 675 Antisense
GCACATTGCCTACCAACAAATCTCC 120 317 705 Antisense
AACGTTCGAGAAGCCGATCTACGGA 483 139 794 Antisense
GATCTACGGATCGAGGCGCGGATCG 696 417 809 Antisense
GAAACGATCTACGGAGCAGCACCAT 433 357 834 Antisense
CACAGTCATCGGAGCAGCCGGGATC 497 193 859 Antisense
TCATCGGCACCGGGATCATCGTGGA 312 619 891 Antisense
Sequence Source Affymetrix Proprietary Database