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[176136_at]

Description Y119D3B.K /REP_DB=WormBase Gene ID /WP=CE26487 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 65      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 26.7
(0.6)
A 		30.7
(3)
A 		20.8
(-3)
A 		26
(0.2)
A 		10
B 23.1
(3)
A 		15.9
(1)
A 		17.8
(1.5)
A 		1.7
(-3)
A 		21
C 23
(-2.9)
A 		32.3
(-0.5)
A 		22.7
(-3)
A 		46.1
(3)
A 		23
avr 24.3
(1) 		26.3
(3) 		20.4
(-3) 		24.6
(1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 10.4
(-1.8)
A 		2.1
(-3)
A 		30.9
(1)
A 		44.9
(3)
A 		10.2
(-1.9)
A 		31.1
(1.1)
A 		43
B 15.8
(-0.4)
A 		34
(3)
A 		24.5
(1.2)
A 		1.7
(-3)
A 		16.9
(-0.2)
A 		22.4
(0.8)
A 		32
C 6.5
(-3)
A 		31.1
(3)
A 		8.5
(-2.5)
A 		10
(-2.1)
A 		24.9
(1.5)
A 		21.6
(0.7)
A 		25
avr 10.9
(-3) 		22.4
(1.9) 		21.3
(1.4) 		18.9
(0.4) 		17.3
(-0.3) 		25
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.7
(3)
A 		6.7
(-0.1)
A 		5.4
(-1.4)
A 		3.8
(-3)
A 		6
B 7.4
(3)
A 		3.9
(0)
A 		4.1
(0.2)
A 		0.4
(-3)
A 		7
C 7.6
(-3)
A 		9.3
(3)
A 		7.9
(-1.9)
A 		7.8
(-2.3)
A 		2
avr 8.2
(3) 		6.6
(0.7) 		5.8
(-0.4) 		4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.9
(-2.3)
A 		0.7
(-3)
A 		6.7
(0.4)
A 		11.4
(3)
A 		3.1
(-1.7)
A 		7.6
(0.9)
A 		11
B 5.5
(-0.2)
A 		11.3
(3)
A 		6
(0.1)
A 		0.5
(-3)
A 		6.9
(0.6)
A 		8.4
(1.4)
A 		11
C 2.4
(-2.7)
A 		9.5
(3)
A 		2.2
(-2.8)
A 		2
(-3)
A 		8.1
(1.9)
A 		7.2
(1.2)
A 		8
avr 3.3
(-3) 		7.2
(2.3) 		5
(-0.7) 		4.6
(-1.2) 		6
(0.7) 		7.7
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19069
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.K NCBI
Target Description Y119D3B.K /REP_DB=WormBase Gene ID /WP=CE26487 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y119D3B.K
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y119D3B.K Y119D3B.K /REP_DB=WormBase Gene ID /WP=CE26487 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064939 10/11 Negative Strand Matching Probes None
SNAP00000002014 10/11 Negative Strand Matching Probes None
GENEFINDER00000002029 10/11 Negative Strand Matching Probes None
Y71D11A.1 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1178861-1179077(-) 94.44 100.0
Sequence
Target Sequence 
>C. ELEGANS:176136_AT
gaagcccatcggaatgagccatcaagagccgtttgagctcatctctggagataggctttt
ggctcagattgtccagggagtagacgaagacgtgggacttcttcatgtcagtcttgccgt
cgtcggatacaaatggctgggcgacgaggatacgggtgtccattccaaggatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCCATCGGAATGAGCCATCAA 157 345 15 Antisense
GGAATGAGCCATCAAGAGCCGTTTG 705 531 25 Antisense
AGAGCCGTTTGAGCTCATCTCTGGA 21 69 39 Antisense
CATCTCTGGAGATAGGCTTTTGGCT 95 197 54 Antisense
GGCTTTTGGCTCAGATTGTCCAGGG 69 537 68 Antisense
GGGAGTAGACGAAGACGTGGGACTT 219 487 90 Antisense
GGGACTTCTTCATGTCAGTCTTGCC 151 495 108 Antisense
CAGTCTTGCCGTCGTCGGATACAAA 8 207 123 Antisense
CGGATACAAATGGCTGGGCGACGAG 386 241 138 Antisense
GGGCGACGAGGATACGGGTGTCCAT 646 489 153 Antisense
ACGGGTGTCCATTCCAAGGATCTGA 542 95 166 Antisense
Sequence Source Affymetrix Proprietary Database