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[176135_s_at]

Description Y119D3B.A /REP_DB=WormBase Gene ID /WP=CE26483 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 32      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 80      6grp_total > 31      4grp_total > 39      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 278.9
(3)
P 		94.5
(-3)
P 		106.2
(-2.6)
P 		122.4
(-2.1)
P 		184
B 274.1
(3)
P 		84.8
(-3)
P 		99.8
(-2.5)
P 		114.5
(-2.1)
P 		189
C 313.4
(3)
P 		130.4
(-2.3)
P 		107.2
(-3)
P 		242.8
(0.9)
P 		206
avr 288.8
(3) 		103.2
(-3) 		104.4
(-3) 		159.9
(-1.2) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 240.2
(0.1)
P 		249
(0.3)
P 		414.9
(3)
P 		263
(0.5)
P 		161.4
(-1.2)
P 		52.9
(-3)
P 		362
B 253.9
(-0.2)
P 		380.5
(2.1)
P 		432
(3)
P 		292.8
(0.5)
P 		159.8
(-1.8)
P 		93.8
(-3)
P 		338
C 254.5
(0.7)
P 		378
(3)
P 		266.9
(0.9)
P 		242.9
(0.5)
P 		133.9
(-1.6)
P 		58.6
(-3)
P 		319
avr 249.5
(0.6) 		335.8
(2.3) 		371.3
(3) 		266.2
(0.9) 		151.7
(-1.3) 		68.4
(-3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 101.6
(3)
P 		20.5
(-2.8)
P 		27.8
(-2.3)
P 		17.9
(-3)
P 		84
B 87.4
(3)
P 		20.9
(-3)
P 		23.1
(-2.8)
P 		24.4
(-2.7)
P 		67
C 103.7
(3)
P 		37.5
(-3)
P 		37.3
(-3)
P 		40.9
(-2.7)
P 		66
avr 97.6
(3) 		26.3
(-3) 		29.4
(-2.7) 		27.7
(-2.9) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 44.3
(-0.6)
P 		88.5
(2.9)
P 		90.4
(3)
P 		66.7
(1.2)
P 		48.7
(-0.2)
P 		12.9
(-3)
P 		78
B 88.3
(0.5)
P 		126.6
(3)
P 		104.9
(1.6)
P 		77.6
(-0.2)
P 		64.9
(-1)
P 		35
(-3)
P 		92
C 94.3
(1.7)
P 		115.3
(3)
P 		67.9
(0)
P 		48.9
(-1.2)
P 		43.3
(-1.5)
P 		19.6
(-3)
P 		96
avr 75.6
(0.6) 		110.1
(3) 		87.7
(1.5) 		64.4
(-0.1) 		52.3
(-1) 		22.5
(-3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176135_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19042
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.A NCBI
Target Description Y119D3B.A /REP_DB=WormBase Gene ID /WP=CE26483 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064955(10), NM_064959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064955 NCBI Caenorhabditis elegans Y119D3B.18 (Y119D3B.18) mRNA, complete cds. 10/11 None
NM_064959 NCBI Caenorhabditis elegans Y119D3B.20 (Y119D3B.20) mRNA, complete cds. 11/11 None
GENEFINDER00000002038 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1247626:1254391:-1 9/11 None
SNAP00000002024 ENSEMBL cdna:SNAP chromosome:CEL140:III:1253748:1258404:-1 9/11 None
GENEFINDER00000002027 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1259703:1262818:-1 9/11 None
SNAP00000002026 ENSEMBL cdna:SNAP chromosome:CEL140:III:1262189:1262714:-1 9/11 None
Y119D3B.18 ENSEMBL cdna:known chromosome:CEL140:III:1253374:1254391:-1 gene:Y119D3B.18 10/11 None
Y119D3B.20 ENSEMBL cdna:known chromosome:CEL140:III:1261934:1262832:-1 gene:Y119D3B.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1261933-1262832(-) 100.0 100.0
chrIII:1253492-1254391(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y119D3B.18
Y119D3B.20
Entrez Gene 191045 Entrez gene
191047 Entrez gene
SwissProt Q95Y62 EMBL-EBI
Q95Y60 EMBL-EBI
WormBase CE25670 Wormbase
CE26483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03495 Hypothetical protein ZC47.7 [Caenorhabditis elegans] gb|AAK39598.1| Hypothetical protein Y119D3B.19 [Caenorhabditis elegans] ref|NP_497362.1| ZC47.7 [Caenorhabditis elegans] ref|NP_497358.1| Y119D3B.19 [Caenorhabditis elegans] 1.0E-145
blast AAK39600 Hypothetical protein Y119D3B.18 [Caenorhabditis elegans] ref|NP_497356.1| Y119D3B.18 [Caenorhabditis elegans] 1.0E-143
blast T27598 hypothetical protein ZC47.2 - Caenorhabditis elegans 1.0E-137
blast AAK39597 Hypothetical protein Y119D3B.20 [Caenorhabditis elegans] ref|NP_497360.1| Y119D3B.20 [Caenorhabditis elegans] 1.0E-122
blast AAK39597 Hypothetical protein Y119D3B.20 [Caenorhabditis elegans] ref|NP_497360.1| Y119D3B.20 [Caenorhabditis elegans] 1.0E-108
blast AAK39597 Hypothetical protein Y119D3B.20 [Caenorhabditis elegans] ref|NP_497360.1| Y119D3B.20 [Caenorhabditis elegans] 1.0E-107
blast T27598 hypothetical protein ZC47.2 - Caenorhabditis elegans 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.2E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.0E-42
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-13
Sequence
Target Sequence 
>C. ELEGANS:176135_S_AT
aagtgactcgaaacttccgtattgctattgatcatcatgggatttgtcttgaagaactgg
tagttaatatggataagctgcaagttttggagctgcgtgtagatggaacatatttcaagt
acatcgatgtaactggtggttgctatgtgaaaatttatagtaagacatgggttcgtcaga
agagaatcccaggaggagatcatgtaaaaataatgttggatgatatggctgaatttttac
agtacccattgaaacttttcaaatgttatctgaatcatatcttcgaagatttcatggata
gactgaagaaagccggtagtatacacacacaaagtacctcccttctttctctgtacccgg
ataaaataattaaagttgtatcgtatcttaagccgggagtacttgaagacatcgcatttg
gtgttgagaagcgcacggaacaagtgaaagagctgtacagtatggagcaatggaagcaag
cgaaaaagaaaaggagaatcttctcattaactccagcaatgttccatatcatatcctttt
cg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGACTCGAAACTTCCGTATTGC 426 157 98 Antisense
ACTTCCGTATTGCTATTGATCATCA 140 105 110 Antisense
GCTGCAAGTTTTGGAGCTGCGTGTA 189 297 174 Antisense
GTACATCGATGTAACTGGTGGTTGC 108 461 216 Antisense
GGTTCGTCAGAAGAGAATCCCAGGA 83 507 267 Antisense
TATACACACACAAAGTACCTCCCTT 419 659 417 Antisense
TTCTTTCTCTGTACCCGGATAAAAT 569 689 440 Antisense
TGTATCGTATCTTAAGCCGGGAGTA 254 559 474 Antisense
GCCGGGAGTACTTGAAGACATCGCA 666 283 489 Antisense
GAATCTTCTCATTAACTCCAGCAAT 686 327 593 Antisense
AATGTTCCATATCATATCCTTTTCG 605 163 615 Antisense
Sequence Source Affymetrix Proprietary Database