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[176132_at]

Description Y119D3B.G /REP_DB=WormBase Gene ID /WP=CE26485 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 27      4grp_total > 53      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 176.9
(3)
M 		141.4
(1.6)
A 		97.8
(-0.2)
A 		28.8
(-3)
A 		148
B 142.6
(3)
A 		92.7
(-3)
A 		126.2
(1)
A 		136
(2.2)
A 		50
C 125.4
(1.6)
A 		146.3
(3)
A 		95.9
(-0.4)
A 		57.2
(-3)
A 		89
avr 148.3
(3) 		126.8
(1.3) 		106.6
(-0.4) 		74
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 89.2
(1.1)
A 		110.3
(2.4)
A 		45.1
(-1.6)
A 		21.1
(-3)
A 		62.5
(-0.5)
A 		120.7
(3)
A 		100
B 91.8
(3)
A 		51
(-2.2)
A 		65.2
(-0.4)
A 		44.7
(-3)
A 		68.6
(0)
A 		58.7
(-1.2)
A 		47
C 134
(3)
M 		40.3
(-2)
A 		59.2
(-1)
A 		31.1
(-2.5)
A 		21.3
(-3)
A 		31.1
(-2.5)
A 		113
avr 105
(3) 		67.2
(-0.1) 		56.5
(-1) 		32.3
(-3) 		50.8
(-1.5) 		70.2
(0.1) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 64.4
(3)
M 		30.7
(-0.4)
A 		25.6
(-0.9)
A 		4.2
(-3)
A 		60
B 45.5
(3)
A 		22.9
(-3)
A 		29.3
(-1.3)
A 		29
(-1.4)
A 		23
C 41.5
(2.9)
A 		42.1
(3)
A 		33.4
(1.4)
A 		9.6
(-3)
A 		33
avr 50.5
(3) 		31.9
(-0.1) 		29.4
(-0.5) 		14.3
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 16.4
(-1)
A 		39.2
(3)
A 		9.8
(-2.2)
A 		5.4
(-3)
A 		18.9
(-0.6)
A 		29.4
(1.3)
A 		34
B 31.9
(3)
A 		17
(-1.5)
A 		15.8
(-1.8)
A 		11.9
(-3)
A 		27.9
(1.8)
A 		21.9
(-0)
A 		20
C 49.7
(3)
M 		12.3
(-2.2)
A 		15.1
(-1.8)
A 		6.3
(-3)
A 		6.9
(-2.9)
A 		10.4
(-2.4)
A 		43
avr 32.7
(3) 		22.8
(0.6) 		13.6
(-1.6) 		7.9
(-3) 		17.9
(-0.6) 		20.6
(0.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19041
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.G NCBI
Target Description Y119D3B.G /REP_DB=WormBase Gene ID /WP=CE26485 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064950(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064950 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-4) (pes-4) mRNA, complete cds. 10/11 A 
GENEFINDER00000002028 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1216108:1222062:-1 11/11 None
SNAP00000002018 ENSEMBL cdna:SNAP chromosome:CEL140:III:1216677:1222062:-1 11/11 None
Y119D3B.17 ENSEMBL cdna:known chromosome:CEL140:III:1216021:1222062:-1 gene:Y119D3B.17 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1216676-1220708(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-4
Ensembl Y119D3B.17
Entrez Gene 175288 Entrez gene
SwissProt Q95Y67 EMBL-EBI
WormBase CE32746 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584888_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE:1584887_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE:1584889_S_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE_2:CFA.11876.1.A1_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE_2:CFAAFFX.15729.1.S1_S_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE_2:CFAAFFX.15730.1.S1_X_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
HG-U133A:209361_S_AT poly(rC) binding protein 4 hs
HG-U133_PLUS_2:209361_S_AT poly(rC) binding protein 4 hs
HG-U133A_2:209361_S_AT poly(rC) binding protein 4 hs
HU35KSUBA:RC_AA599643_AT poly(rC) binding protein 4 hs
U133_X3P:G13278755_3P_A_AT poly(rC) binding protein 4 hs
HG-U95AV2:34185_AT poly(rC) binding protein 4 hs
HG-U95AV2:34186_AT Poly(rC) binding protein 4 hs
MOE430A:1449055_X_AT poly(rC) binding protein 4 mm
MOUSE430A_2:1449055_X_AT poly(rC) binding protein 4 mm
MOUSE430_2:1449055_X_AT poly(rC) binding protein 4 mm
MOE430A:1449054_A_AT poly(rC) binding protein 4 mm
MOUSE430A_2:1449054_A_AT poly(rC) binding protein 4 mm
MOUSE430_2:1449054_A_AT poly(rC) binding protein 4 mm
MG-U74AV2:160352_AT poly(rC) binding protein 4 mm
MOE430A:1433658_X_AT poly(rC) binding protein 4 mm
MOUSE430A_2:1433658_X_AT poly(rC) binding protein 4 mm
MOUSE430_2:1433658_X_AT poly(rC) binding protein 4 mm
MG-U74BV2:106546_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14329_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14329_G_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14330_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14330_G_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC23480_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
RG-U34A:RC_AA891314_AT poly(rC) binding protein 4 (predicted) rn
RAE230A:1371915_AT poly(rC) binding protein 4 (predicted) rn
RAT230_2:1371915_AT poly(rC) binding protein 4 (predicted) rn
RAE230B:1395441_AT poly(rC) binding protein 4 (predicted) rn
RAT230_2:1395441_AT poly(rC) binding protein 4 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29714 Patterned expression site protein 4 [Caenorhabditis elegans] ref|NP_497351.2| Patterned Expression Site family member (pes-4) [Caenorhabditis elegans] 1.0E-127
blast AAK29714 Patterned expression site protein 4 [Caenorhabditis elegans] ref|NP_497351.2| Patterned Expression Site family member (pes-4) [Caenorhabditis elegans] 2.0E-96
blast CAE69489 Hypothetical protein CBG15694 [Caenorhabditis briggsae] 1.0E-89
blast CAE69489 Hypothetical protein CBG15694 [Caenorhabditis briggsae] 3.0E-86
blast AAK29714 Patterned expression site protein 4 [Caenorhabditis elegans] ref|NP_497351.2| Patterned Expression Site family member (pes-4) [Caenorhabditis elegans] 3.0E-82
blast CAE69489 Hypothetical protein CBG15694 [Caenorhabditis briggsae] 9.0E-72
blast P57722 Poly(rC)-binding protein 3 (Alpha-CP3) 6.0E-47
blast P57722 Poly(rC)-binding protein 3 (Alpha-CP3) 8.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 5.6E-15
Pfam IPR004087 EMBL-EBI KH 3.9E-17
Sequence
Target Sequence 
>C. ELEGANS:176132_AT
aaaggctccacaatcacataccgcccaaaaccaacgttcaacccattggcaatcgccacg
tcagcggctacaattgccgcacaacaacaacaggcacaggctcaacagcaactcgccgcg
gcagcacttatgggtggcggacagggagtccaggtacagcagcaactggtcactaacgca
ctgctccaacaacatcaatttgcagccgttcaacaagagctagccgcccgtgccgctctc
ttcaatcaacagcttatgatgcccggacaacagcagcaggcttcacaggctcaagaagta
tacttgggtcaacatgggctgatctacacggcaaatggagtccaactcggcggtcaggac
aactccaaggctatggaagccggtgcggcagcggctgcagctgctcagtggcagggctat
gatatggctgccatgcaacagcagcagcaacaacagcaacaattattgaatcaatatgct
cttaatcagagtatgctaatcggcgccccgttcatgaagggcggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCTCCACAATCACATACCGCC 473 121 241 Antisense
AACGTTCAACCCATTGGCAATCGCC 367 143 273 Antisense
TCGCCACGTCAGCGGCTACAATTGC 519 597 293 Antisense
GCGGCAGCACTTATGGGTGGCGGAC 649 293 358 Antisense
GACAGGGAGTCCAGGTACAGCAGCA 566 367 380 Antisense
GCAGCAACTGGTCACTAACGCACTG 289 313 399 Antisense
ACAGCTTATGATGCCCGGACAACAG 101 107 489 Antisense
GACAACAGCAGCAGGCTTCACAGGC 20 367 506 Antisense
GTCAACATGGGCTGATCTACACGGC 157 463 548 Antisense
GAGTCCAACTCGGCGGTCAGGACAA 374 401 578 Antisense
GGCGCCCCGTTCATGAAGGGCGGCC 195 491 742 Antisense
Sequence Source Affymetrix Proprietary Database