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[176130_at]

Description Y119D3B.F /REP_DB=WormBase Gene ID /WP=CE26484 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_total > 16      4grp_total > 37      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 170.4
(1.1)
P 		178.7
(3)
P 		152.7
(-3)
P 		177.5
(2.7)
P 		26
B 186.2
(3)
P 		170.1
(0.7)
P 		144.5
(-3)
P 		159.3
(-0.9)
P 		42
C 228.7
(3)
P 		209
(1.7)
P 		138.3
(-3)
P 		208.6
(1.7)
P 		90
avr 195.1
(3) 		185.9
(1.9) 		145.2
(-3) 		181.8
(1.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 123.1
(2)
A 		134.2
(3)
P 		89.3
(-1.2)
P 		69.7
(-3)
A 		73.5
(-2.6)
A 		105.2
(0.3)
A 		65
B 122.2
(2.2)
P 		133.4
(3)
P 		66.7
(-1.8)
A 		98.2
(0.5)
A 		77.1
(-1)
A 		49.9
(-3)
P 		84
C 210
(3)
P 		92.3
(-1.5)
A 		81.3
(-1.9)
P 		58.6
(-2.8)
A 		86.8
(-1.7)
P 		53.5
(-3)
A 		157
avr 151.8
(3) 		120
(0.7) 		79.1
(-2.3) 		75.5
(-2.6) 		79.1
(-2.3) 		69.5
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 62
(3)
P 		38.8
(-0.9)
P 		39.9
(-0.7)
P 		26
(-3)
P 		36
B 59.4
(3)
P 		42
(-1)
P 		33.5
(-3)
P 		33.9
(-2.9)
P 		26
C 75.7
(3)
P 		60.1
(0.7)
P 		48.2
(-1.1)
P 		35.2
(-3)
P 		41
avr 65.7
(3) 		47
(-0.3) 		40.5
(-1.4) 		31.7
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 22.7
(-2)
A 		47.7
(3)
P 		19.5
(-2.6)
P 		17.7
(-3)
A 		22.2
(-2.1)
A 		25.6
(-1.4)
A 		30
B 42.5
(2.6)
P 		44.4
(3)
P 		16.2
(-3)
A 		26
(-0.9)
A 		31.3
(0.2)
A 		18.6
(-2.5)
P 		28
C 77.8
(3)
P 		28.2
(-1.5)
A 		20.7
(-2.2)
P 		11.8
(-3)
A 		28.1
(-1.5)
P 		17.9
(-2.4)
A 		66
avr 47.7
(3) 		40.1
(1.4) 		18.8
(-2.9) 		18.5
(-3) 		27.2
(-1.2) 		20.7
(-2.5) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19015
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.F NCBI
Target Description Y119D3B.F /REP_DB=WormBase Gene ID /WP=CE26484 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064950(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064950 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-4) (pes-4) mRNA, complete cds. 10/11 A 
GENEFINDER00000002028 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1216108:1222062:-1 10/11 None
SNAP00000002018 ENSEMBL cdna:SNAP chromosome:CEL140:III:1216677:1222062:-1 10/11 None
Y119D3B.17 ENSEMBL cdna:known chromosome:CEL140:III:1216021:1222062:-1 gene:Y119D3B.17 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1221039-1224190(-) 97.87 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-4
Ensembl Y119D3B.17
Entrez Gene 175288 Entrez gene
SwissProt Q95Y67 EMBL-EBI
WormBase CE32746 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584888_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE:1584887_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE:1584889_S_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE_2:CFA.11876.1.A1_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE_2:CFAAFFX.15729.1.S1_S_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
CANINE_2:CFAAFFX.15730.1.S1_X_AT similar to Poly(rC)-binding protein 4 (Alpha-CP4) cfa
HG-U133A:209361_S_AT poly(rC) binding protein 4 hs
HG-U133_PLUS_2:209361_S_AT poly(rC) binding protein 4 hs
HG-U133A_2:209361_S_AT poly(rC) binding protein 4 hs
HU35KSUBA:RC_AA599643_AT poly(rC) binding protein 4 hs
U133_X3P:G13278755_3P_A_AT poly(rC) binding protein 4 hs
HG-U95AV2:34185_AT poly(rC) binding protein 4 hs
HG-U95AV2:34186_AT Poly(rC) binding protein 4 hs
MOE430A:1449055_X_AT poly(rC) binding protein 4 mm
MOUSE430A_2:1449055_X_AT poly(rC) binding protein 4 mm
MOUSE430_2:1449055_X_AT poly(rC) binding protein 4 mm
MOE430A:1449054_A_AT poly(rC) binding protein 4 mm
MOUSE430A_2:1449054_A_AT poly(rC) binding protein 4 mm
MOUSE430_2:1449054_A_AT poly(rC) binding protein 4 mm
MG-U74AV2:160352_AT poly(rC) binding protein 4 mm
MOE430A:1433658_X_AT poly(rC) binding protein 4 mm
MOUSE430A_2:1433658_X_AT poly(rC) binding protein 4 mm
MOUSE430_2:1433658_X_AT poly(rC) binding protein 4 mm
MG-U74BV2:106546_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14329_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14329_G_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14330_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC14330_G_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
MU19KSUBA:TC23480_AT Poly(rC) binding protein 4, mRNA (cDNA clone MGC:6891 IMAGE:2654291) mm
RG-U34A:RC_AA891314_AT poly(rC) binding protein 4 (predicted) rn
RAE230A:1371915_AT poly(rC) binding protein 4 (predicted) rn
RAT230_2:1371915_AT poly(rC) binding protein 4 (predicted) rn
RAE230B:1395441_AT poly(rC) binding protein 4 (predicted) rn
RAT230_2:1395441_AT poly(rC) binding protein 4 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29714 Patterned expression site protein 4 [Caenorhabditis elegans] ref|NP_497351.2| Patterned Expression Site family member (pes-4) [Caenorhabditis elegans] 1.0E-127
blast AAK29714 Patterned expression site protein 4 [Caenorhabditis elegans] ref|NP_497351.2| Patterned Expression Site family member (pes-4) [Caenorhabditis elegans] 2.0E-96
blast CAE69489 Hypothetical protein CBG15694 [Caenorhabditis briggsae] 1.0E-89
blast CAE69489 Hypothetical protein CBG15694 [Caenorhabditis briggsae] 3.0E-86
blast AAK29714 Patterned expression site protein 4 [Caenorhabditis elegans] ref|NP_497351.2| Patterned Expression Site family member (pes-4) [Caenorhabditis elegans] 3.0E-82
blast CAE69489 Hypothetical protein CBG15694 [Caenorhabditis briggsae] 9.0E-72
blast P57722 Poly(rC)-binding protein 3 (Alpha-CP3) 6.0E-47
blast P57722 Poly(rC)-binding protein 3 (Alpha-CP3) 8.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 5.6E-15
Pfam IPR004087 EMBL-EBI KH 3.9E-17
Sequence
Target Sequence 
>C. ELEGANS:176130_AT
ggggatggacccatccatgtacccgggcgcatctgcaacatacttatcatatccacaaca
gaatgctagtcaagactacctgggagcatacgcagcacagacaactacaacgacaaggaa
tactgcaaatggctcaacctcatcggaccacctactgggcgaccccagttcttcctgctc
accacgagaaacctcaccaagcaccacaagccttgtgctcaccatacgactcctcatgca
gggcaaagaagtcggtagtataatcggcaaaaaaggagatcaaatcaaaaagattcgcga
agaatccggcgcgaaaatcaacatctccgatggctcgtgccccgagagaattgtgacgat
tacggggactcttggcgttatcggaaaggcttttaatatggtttgcaataaattcgaaga
ggatatgctgttactgccgaattctgtaccaaaaccaccgattaccatgagggttatcgt
gccggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGATGGACCCATCCATGTACCCG 262 493 195 Antisense
CGGGCGCATCTGCAACATACTTATC 338 245 218 Antisense
GACTACCTGGGAGCATACGCAGCAC 7 373 268 Antisense
TACTGCAAATGGCTCAACCTCATCG 478 647 315 Antisense
AAGCACCACAAGCCTTGTGCTCACC 554 151 393 Antisense
ATACGACTCCTCATGCAGGGCAAAG 236 23 418 Antisense
AATCAACATCTCCGATGGCTCGTGC 473 171 510 Antisense
TACGGGGACTCTTGGCGTTATCGGA 179 645 555 Antisense
ATATGCTGTTACTGCCGAATTCTGT 202 21 617 Antisense
GAATTCTGTACCAAAACCACCGATT 150 323 633 Antisense
TACCATGAGGGTTATCGTGCCGGCG 555 649 657 Antisense
Sequence Source Affymetrix Proprietary Database