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[176129_at]

Description Y119D3B.N /REP_DB=WormBase Gene ID /WP=CE23382 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 93      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10
(-1.5)
A 		10.3
(-1.4)
A 		6.7
(-3)
A 		19.9
(3)
A 		13
B 2.3
(-3)
A 		2.8
(-2.5)
A 		8.9
(3)
A 		8.2
(2.4)
A 		7
C 8.7
(-0.2)
A 		9.5
(3)
A 		8.2
(-2.2)
A 		8
(-3)
A 		2
avr 7
(-3) 		7.5
(-2.4) 		7.9
(-1.9) 		12
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.3
(-0.9)
A 		3.9
(-3)
A 		22
(0.4)
A 		10.4
(-1.8)
A 		36.2
(3)
A 		7.9
(-2.3)
A 		32
B 8.2
(-1.1)
A 		10.4
(0.5)
A 		12.3
(1.8)
A 		13.9
(3)
A 		13.3
(2.6)
A 		5.6
(-3)
A 		8
C 11.3
(-1.7)
A 		8.3
(-2.7)
A 		7.6
(-3)
A 		7.5
(-3)
A 		24.6
(3)
A 		8.7
(-2.6)
A 		17
avr 11.6
(-1.5) 		7.5
(-3) 		14
(-0.7) 		10.6
(-1.9) 		24.7
(3) 		7.4
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.7
(3)
A 		2.2
(-1.5)
A 		1.7
(-3)
A 		2.9
(0.6)
A 		2
B 0.7
(-3)
A 		0.7
(-3)
A 		2.1
(3)
A 		1.8
(1.7)
A 		1
C 2.9
(3)
A 		2.7
(2.2)
A 		2.8
(2.6)
A 		1.4
(-3)
A 		2
avr 2.4
(3) 		1.9
(-3) 		2.2
(0.6) 		2
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.8
(-2.1)
A 		1.4
(-3)
A 		4.8
(-0.9)
A 		2.6
(-2.2)
A 		10.9
(3)
A 		1.9
(-2.7)
A 		10
B 2.9
(-1.5)
A 		3.5
(-0.5)
A 		3
(-1.4)
A 		3.7
(-0.1)
A 		5.4
(3)
A 		2.1
(-3)
A 		3
C 4.2
(-0.5)
A 		2.5
(-2.1)
A 		1.9
(-2.6)
A 		1.5
(-3)
A 		8
(3)
A 		2.9
(-1.7)
A 		7
avr 3.3
(-2) 		2.5
(-2.8) 		3.2
(-2.1) 		2.6
(-2.7) 		8.1
(3) 		2.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19018
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.N NCBI
Target Description Y119D3B.N /REP_DB=WormBase Gene ID /WP=CE23382 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y119D3B.N
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y119D3B.N Y119D3B.N /REP_DB=WormBase Gene ID /WP=CE23382 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064944 10/11 Negative Strand Matching Probes B 
SNAP00000002015 10/11 Negative Strand Matching Probes None
GENEFINDER00000002030 10/11 Negative Strand Matching Probes None
Y119D3B.14 10/11 Negative Strand Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1189067-1189451(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176129_AT
tcgccctgtgtttccacaatagtttggccggtatcccgatcaaatcgaattttcatcgac
ggatcctcccgcgtgagctcttccaaagccttattaaactgattaagctgacgattcgac
ggaggctctatacaacaaaagaacaccgcatccgcggaggcggagcttgcgactaccgta
tccccggttactgtagtctgaaggcctgcgacaacggtgatatttccggcggagacttgc
tcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCCTGTGTTTCCACAATAGTTT 632 597 20 Antisense
TCCACAATAGTTTGGCCGGTATCCC 179 587 32 Antisense
TTGGCCGGTATCCCGATCAAATCGA 110 703 43 Antisense
CGAATTTTCATCGACGGATCCTCCC 47 253 65 Antisense
CGTGAGCTCTTCCAAAGCCTTATTA 507 243 91 Antisense
AGCTGACGATTCGACGGAGGCTCTA 40 81 125 Antisense
CAACAAAAGAACACCGCATCCGCGG 23 189 152 Antisense
GCATCCGCGGAGGCGGAGCTTGCGA 702 307 167 Antisense
GTTACTGTAGTCTGAAGGCCTGCGA 307 441 206 Antisense
GGCCTGCGACAACGGTGATATTTCC 267 543 222 Antisense
GATATTTCCGGCGGAGACTTGCTCG 562 425 238 Antisense
Sequence Source Affymetrix Proprietary Database