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[176128_at]

Description ZK652.2 /REP_DB=WormBase Gene ID /WP=CE00448 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 02      4grp_high_8_8 > 55      6grp_highest_nonorm > 47      6grp_total > 13      4grp_total > 48      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2036
1 2 3 4 range
A 2714.3
(-2.7)
P 		3972.4
(1.5)
P 		4410.9
(3)
P 		2617.8
(-3)
P 		1793
B 2715.3
(-3)
P 		3966.3
(0.9)
P 		4653.4
(3)
P 		3135.6
(-1.7)
P 		1938
C 2800
(-3)
P 		4498.3
(3)
P 		4436.4
(2.8)
P 		2822.6
(-2.9)
P 		1698
avr 2743.2
(-3) 		4145.7
(1.8) 		4500.2
(3) 		2858.7
(-2.6) 		1757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1176
1 2 3 4 5 6 range
A 3338.2
(2)
P 		3145.7
(0.6)
P 		3477.2
(3)
P 		3195.1
(0.9)
P 		2836.1
(-1.7)
P 		2654.1
(-3)
P 		823
B 3336.9
(1.9)
P 		3464.2
(3)
P 		3394
(2.4)
P 		2831.8
(-2.3)
P 		3072.5
(-0.3)
P 		2753.9
(-3)
P 		710
C 3829.9
(3)
P 		3251.3
(-0.2)
P 		2757.9
(-3)
P 		3765
(2.6)
P 		2803.7
(-2.7)
P 		3066.4
(-1.3)
P 		1072
avr 3501.7
(3) 		3287.1
(1.1) 		3209.7
(0.4) 		3264
(0.9) 		2904.1
(-2.3) 		2824.8
(-3) 		677
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1163
1 2 3 4 range
A 988.3
(1.7)
P 		862.3
(0.7)
P 		1153.1
(3)
P 		383.2
(-3)
P 		770
B 865.9
(-0.1)
P 		979.6
(1.6)
P 		1078.3
(3)
P 		668.2
(-3)
P 		410
C 926.9
(-0.5)
P 		1293.3
(1.6)
P 		1546.2
(3)
P 		475.9
(-3)
P 		1070
avr 927
(0.3) 		1045.1
(1.3) 		1259.2
(3) 		509.1
(-3) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 804
1 2 3 4 5 6 range
A 615.4
(-3)
P 		1118.8
(3)
P 		757.3
(-1.3)
P 		810.4
(-0.7)
P 		855.8
(-0.1)
P 		646.2
(-2.6)
P 		503
B 1161.1
(1.9)
P 		1153.1
(1.9)
P 		824.2
(-2.1)
P 		750.1
(-3)
P 		1248.3
(3)
P 		1026.9
(0.3)
P 		498
C 1419.6
(3)
P 		992.1
(-0.6)
P 		701.9
(-3)
P 		757.1
(-2.5)
P 		907.2
(-1.3)
P 		1026.5
(-0.3)
P 		718
avr 1065.4
(2.6) 		1088
(3) 		761.1
(-3) 		772.5
(-2.8) 		1003.8
(1.5) 		899.9
(-0.5) 		327
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7972
Sequence Type Exemplar sequence
Representative Public ID ZK652.2 NCBI
Target Description ZK652.2 /REP_DB=WormBase Gene ID /WP=CE00448 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066305 NCBI Caenorhabditis elegans Translocase of Outer Mitochondrial Membrane family member (tomm-7) (tomm-7) mRNA, complete cds. 11/11 None
ZK652.2 ENSEMBL cdna:known chromosome:CEL140:III:7859534:7860081:1 gene:ZK652.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7859531-7859967(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tomm-7
Ensembl ZK652.2
Entrez Gene 176101 Entrez gene
SwissProt P34660 EMBL-EBI
WormBase CE00448 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28213 Translocase of outer mitochondrial membrane protein 7 [Caenorhabditis elegans] ref|NP_498706.1| Translocase of Outer Mitochondrial Membrane family member (tomm-7) [Caenorhabditis elegans] sp|P34660|TOM7_CAEEL Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog) 5.0E-27
blast CAE66874 Hypothetical protein CBG12252 [Caenorhabditis briggsae] 5.0E-25
Sequence
Target Sequence 
>C. ELEGANS:176128_AT
cccagctaccaagtctttcatcggtaagacagtcgatatttccacatttgcaatccaatg
gggattcgtgccgtttgtggtctaccttggatttaagaaaggcgctgagccaatgccaaa
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGCTACCAAGTCTTTCATCGGT 146 257 24 Antisense
GCTACCAAGTCTTTCATCGGTAAGA 516 301 28 Antisense
GGTAAGACAGTCGATATTTCCACAT 545 503 46 Antisense
GACAGTCGATATTTCCACATTTGCA 240 369 51 Antisense
GATATTTCCACATTTGCAATCCAAT 314 427 58 Antisense
TTTCCACATTTGCAATCCAATGGGG 525 667 62 Antisense
ATCCAATGGGGATTCGTGCCGTTTG 346 39 76 Antisense
CAATGGGGATTCGTGCCGTTTGTGG 320 181 79 Antisense
TGCCGTTTGTGGTCTACCTTGGATT 305 583 92 Antisense
TGTGGTCTACCTTGGATTTAAGAAA 670 553 99 Antisense
GAAAGGCGCTGAGCCAATGCCAAAT 374 361 120 Antisense
Sequence Source Affymetrix Proprietary Database