[Home] | [Total List]

[176127_at] 7TM chemoreceptor, srh family

Description ZC239.18 /REP_DB=WormBase Gene ID /WP=CE15144 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 54      4grp_total > 10      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 4.1
(-3)
A 		12
(-2.2)
A 		7.2
(-2.7)
A 		63.6
(3)
A 		60
B 6.5
(-2.9)
A 		6.3
(-3)
A 		10
(-1.3)
A 		19.1
(3)
A 		13
C 4
(-3)
A 		6.7
(3)
A 		4
(-3)
A 		6.6
(2.8)
A 		3
avr 4.9
(-3) 		8.3
(-2.2) 		7.1
(-2.5) 		29.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.1
(-3)
A 		4.1
(-3)
A 		30.3
(2.4)
A 		4.8
(-2.9)
A 		8.2
(-2.2)
A 		33.2
(3)
A 		29
B 3
(-3)
A 		6.7
(-1.9)
A 		22.9
(3)
A 		3.7
(-2.8)
A 		7.4
(-1.7)
A 		4.8
(-2.5)
A 		20
C 3.2
(-2.9)
A 		19.7
(3)
A 		5.5
(-2.1)
A 		3
(-3)
A 		4.6
(-2.4)
A 		3.1
(-3)
A 		17
avr 3.4
(-3) 		10.2
(-0.5) 		19.6
(3) 		3.8
(-2.9) 		6.7
(-1.8) 		13.7
(0.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-3)
A 		2.6
(-2.2)
A 		1.9
(-2.7)
A 		9.3
(3)
A 		8
B 2.1
(-1.8)
A 		1.6
(-3)
A 		2.3
(-1.3)
A 		4.1
(3)
A 		3
C 1.3
(-1.5)
A 		1.9
(3)
A 		1.4
(-0.8)
A 		1.1
(-3)
A 		1
avr 1.6
(-3) 		2
(-2.3) 		1.9
(-2.4) 		4.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.5
(-2.4)
A 		6.6
(1.8)
A 		1.2
(-2.6)
A 		2.5
(-1.5)
A 		8.1
(3)
A 		7
B 1
(-3)
A 		2.2
(-1.4)
A 		5.6
(3)
A 		1
(-3)
A 		3
(-0.4)
A 		1.8
(-2)
A 		5
C 1.2
(-2.3)
A 		6
(3)
A 		1.4
(-2.1)
A 		0.6
(-3)
A 		1.5
(-2)
A 		1
(-2.6)
A 		5
avr 1
(-2.8) 		3.2
(0.8) 		4.5
(3) 		0.9
(-3) 		2.3
(-0.7) 		3.6
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4938
Sequence Type Exemplar sequence
Representative Public ID ZC239.18 NCBI
Target Description ZC239.18 /REP_DB=WormBase Gene ID /WP=CE15144 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062083(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062083 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-297) (srh-297) mRNA, complete cds. 10/11 None
SNAP00000021552 ENSEMBL cdna:SNAP chromosome:CEL140:II:3228880:3229736:-1 10/11 None
C17F4.4 ENSEMBL cdna:known chromosome:CEL140:II:3228880:3230517:-1 gene:C17F4.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021576 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3228675-3229735(-) 90.22 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-297
Ensembl C17F4.4
Entrez Gene 182738 Entrez gene
SwissProt O16539 EMBL-EBI
WormBase CE35955 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 0.0
blast CAA19566 Hypothetical protein Y94A7B.4 [Caenorhabditis elegans] ref|NP_507497.1| Serpentine Receptor, class H family member (srh-296) [Caenorhabditis elegans] 1.0E-118
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 1.0E-116
blast CAB03507 Hypothetical protein ZK1037.8 [Caenorhabditis elegans] ref|NP_506801.1| Serpentine Receptor, class H family member (srh-295) [Caenorhabditis elegans] 1.0E-104
blast CAA19566 Hypothetical protein Y94A7B.4 [Caenorhabditis elegans] ref|NP_507497.1| Serpentine Receptor, class H family member (srh-296) [Caenorhabditis elegans] 2.0E-71
blast CAB03507 Hypothetical protein ZK1037.8 [Caenorhabditis elegans] ref|NP_506801.1| Serpentine Receptor, class H family member (srh-295) [Caenorhabditis elegans] 7.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.2E-77
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494484.3 7 15-34,47-69,98-120,127-149,195-212,238-260,270-289
C17F4.4 7 15-34,47-69,98-120,127-149,195-212,238-260,270-289
SNAP00000021552 4 21-40,86-103,129-151,161-180
Sequence
Target Sequence 
>C. ELEGANS:176127_AT
tggcagtatatccgttacccatttctaatgctcaattacttcgctggactaacctattgc
attccagtctacttagatgttccaaaggatcaggaaattgcgaggcgtaaactgttcaat
aagtatccaaatgcttgtgaattcgcttccgacaagtctctagtatctgtgatcaatttt
ggggacactgcttggacgaggcttcgagataatgctctgacattcacgcttttggtggag
attattacttttgttgtgcttttgagagtgaagatgaatagagccttaaagacttcaata
tctggggacacacttcgaatgcaaaagaaattcattaaagccttgaatatacaggtggga
aatgttcaagccaaaaaatgggcggagcttgagccaagaatcgcaattcccatcctcgta
ttctttgtgcccacagctgttggagttctgatagacccggtgaaagatgaacaactgcaa
cacaacctgatattcattgcagtgtcatttcacggagtcatatccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCAGTATATCCGTTACCCATTTC 304 545 58 Antisense
TTCGCTGGACTAACCTATTGCATTC 393 695 97 Antisense
GTGAATTCGCTTCCGACAAGTCTCT 463 481 194 Antisense
TTTGGGGACACTGCTTGGACGAGGC 373 665 235 Antisense
GCTCTGACATTCACGCTTTTGGTGG 111 301 271 Antisense
ATATCTGGGGACACACTTCGAATGC 271 19 355 Antisense
GAGCCAAGAATCGCAATTCCCATCC 210 385 448 Antisense
GTGCCCACAGCTGTTGGAGTTCTGA 142 479 484 Antisense
GAACAACTGCAACACAACCTGATAT 166 353 526 Antisense
GATATTCATTGCAGTGTCATTTCAC 113 427 546 Antisense
GTCATTTCACGGAGTCATATCCACG 238 467 561 Antisense
Sequence Source Affymetrix Proprietary Database