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[176125_at]

Description F09G8.1 /REP_DB=WormBase Gene ID /WP=CE24889 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 0      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 11.1
(0.7)
A 		5.4
(-3)
A 		14.7
(3)
A 		6
(-2.6)
A 		9
B 1.7
(-3)
A 		4.7
(-1.9)
A 		15.9
(2.4)
A 		17.4
(3)
A 		16
C 1.5
(-3)
A 		2.3
(-2.8)
A 		2.3
(-2.8)
A 		31.2
(3)
A 		30
avr 4.8
(-2.7) 		4.1
(-3) 		11
(-0.1) 		18.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 35.1
(3)
A 		2.2
(-3)
A 		26.4
(1.4)
A 		12.1
(-1.2)
A 		2.4
(-3)
A 		6.3
(-2.3)
A 		33
B 2.6
(-1.7)
A 		4
(-0.3)
A 		1.7
(-2.6)
A 		1.6
(-2.7)
A 		1.3
(-3)
A 		7.3
(3)
A 		6
C 17.3
(-0.8)
A 		24.7
(0.5)
P 		17.1
(-0.8)
A 		39.9
(3)
A 		11.6
(-1.7)
A 		4.1
(-3)
A 		36
avr 18.3
(3) 		10.3
(-0.6) 		15.1
(1.5) 		17.9
(2.8) 		5.1
(-3) 		5.9
(-2.6) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4
(3)
A 		1.2
(-2.4)
A 		3.8
(2.6)
A 		0.9
(-3)
A 		3
B 0.5
(-3)
A 		1.2
(-1.7)
A 		3.7
(3)
A 		3.7
(3)
A 		3
C 0.5
(-3)
A 		0.7
(-2.8)
A 		0.8
(-2.6)
A 		5.3
(3)
A 		5
avr 1.7
(-1.2) 		1
(-3) 		2.8
(1.7) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.5
(3)
A 		0.8
(-2.9)
A 		5.8
(2.3)
A 		3.1
(-0.5)
A 		0.7
(-3)
A 		1.5
(-2.2)
A 		6
B 0.9
(-1.7)
A 		1.3
(-0.7)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-2.7)
A 		2.7
(3)
A 		2
C 6.4
(1.5)
A 		7.5
(2.5)
P 		4.4
(-0.3)
A 		8
(3)
A 		3.8
(-0.8)
A 		1.4
(-3)
A 		7
avr 4.6
(3) 		3.2
(0.1) 		3.5
(0.7) 		3.8
(1.3) 		1.7
(-3) 		1.9
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6723
Sequence Type Exemplar sequence
Representative Public ID F09G8.1 NCBI
Target Description F09G8.1 /REP_DB=WormBase Gene ID /WP=CE24889 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026077 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-10) (mig-10) mRNA, complete cds. 11/11 None
GENEFINDER00000040920 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8279024:8284801:1 11/11 None
F10E9.6c ENSEMBL cdna:known chromosome:CEL140:III:8279024:8305730:1 gene:F10E9.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040903 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176168 3 1 NM_001026077 176125_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8279019-8282336(+) 100.0 100.0
Public Domain and Genome References
Ensembl F10E9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR25648 Abnormal cell migration protein 10, isoform c [Caenorhabditis elegans] ref|NP_001021248.1| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] sp|P34400|MIG10_CAEEL Abnormal cell migration protein 0.0
blast AAK84523 Abnormal cell migration protein 10, isoform a [Caenorhabditis elegans] ref|NP_498822.2| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] 0.0
blast AAA28018 Abnormal cell migration protein 10, isoform b [Caenorhabditis elegans] ref|NP_498821.2| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] 0.0
blast AAR25648 Abnormal cell migration protein 10, isoform c [Caenorhabditis elegans] ref|NP_001021248.1| abnormal cell MIGration family member (mig-10) [Caenorhabditis elegans] sp|P34400|MIG10_CAEEL Abnormal cell migration protein 4.0E-30
blast CAE70173 Hypothetical protein CBG16645 [Caenorhabditis briggsae] 6.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000159 EMBL-EBI RA domain 2.9E-4
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.9E-18
Sequence
Target Sequence 
>C. ELEGANS:176125_AT
tggacagttgcgaagaggaatgcgatctggaagttgacagtgacgaagaagatcaacttt
ttggtgaaaagtgcatttccctgctctcaagtcttctaccactttcctcgtccacacttt
tgagcaacgctattaatttggaactcgacgaagttgaacggcctcctccgttgttgaacg
tgctcgaagagcaacagtttccgaaggtttgtgctaatattgaagaggagaacgagttag
aagccgatacagaagaggatattgctgagacggcagatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACAGTTGCGAAGAGGAATGCGA 534 547 14 Antisense
GAGGAATGCGATCTGGAAGTTGACA 256 405 28 Antisense
TGGTGAAAAGTGCATTTCCCTGCTC 659 551 75 Antisense
CCTCGTCCACACTTTTGAGCAACGC 477 267 119 Antisense
AACGCTATTAATTTGGAACTCGACG 588 143 139 Antisense
GAACTCGACGAAGTTGAACGGCCTC 219 349 154 Antisense
CTCCTCCGTTGTTGAACGTGCTCGA 470 235 176 Antisense
GCTCGAAGAGCAACAGTTTCCGAAG 293 299 195 Antisense
GTTTCCGAAGGTTTGTGCTAATATT 427 449 210 Antisense
GAACGAGTTAGAAGCCGATACAGAA 103 345 243 Antisense
GGATATTGCTGAGACGGCAGATGAC 696 509 270 Antisense
Sequence Source Affymetrix Proprietary Database