[Home] | [Total List]

[176124_at]

Description ZK652.3 /REP_DB=WormBase Gene ID /WP=CE00449 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 01      4grp_highest_8_8 > 02      4grp_high_8_8 > 45      6grp_highest_nonorm > 76      6grp_total > 09      4grp_total > 50      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 999
1 2 3 4 range
A 733
(-3)
P 		1319
(3)
P 		1269.6
(2.5)
P 		953.6
(-0.7)
P 		586
B 884.8
(-1.7)
P 		1577
(3)
P 		1344.7
(1.4)
P 		699.7
(-3)
P 		877
C 838.6
(-2.6)
P 		1698.9
(3)
P 		1457.8
(1.4)
P 		784.2
(-3)
P 		915
avr 818.8
(-2.9) 		1531.6
(3) 		1357.4
(1.5) 		812.5
(-3) 		719

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 691
1 2 3 4 5 6 range
A 1618.4
(3)
P 		928.1
(-3)
P 		1535.4
(2.3)
P 		1210.5
(-0.5)
P 		945.7
(-2.8)
P 		1085.2
(-1.6)
P 		690
B 1345.5
(3)
P 		936.5
(-3)
P 		1084.4
(-0.8)
P 		1180.6
(0.6)
P 		1146.2
(0.1)
P 		1027.5
(-1.7)
P 		409
C 1168.3
(3)
P 		950
(-2.4)
P 		927.6
(-3)
P 		1081.4
(0.8)
P 		991.8
(-1.4)
P 		1003.5
(-1.1)
P 		241
avr 1377.4
(3) 		938.2
(-3) 		1182.5
(0.3) 		1157.5
(-0) 		1027.9
(-1.8) 		1038.7
(-1.6) 		439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 266.9
(1)
P 		286.3
(1.6)
P 		331.9
(3)
P 		139.6
(-3)
P 		192
B 282.2
(0.3)
P 		389.5
(3)
P 		311.6
(1.1)
P 		149.1
(-3)
P 		240
C 277.6
(-0.7)
P 		488.4
(2.7)
P 		508.1
(3)
P 		132.2
(-3)
P 		376
avr 275.6
(0.3) 		388.1
(3) 		383.9
(2.9) 		140.3
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 298.3
(-0.1)
P 		330.1
(2.6)
P 		334.4
(3)
P 		307
(0.7)
P 		285.4
(-1.2)
P 		264.2
(-3)
P 		70
B 468.2
(3)
P 		311.7
(-1.6)
P 		263.3
(-3)
P 		312.7
(-1.6)
P 		465.7
(2.9)
P 		383.2
(0.5)
P 		205
C 433
(3)
P 		289.9
(-1)
P 		236.1
(-2.5)
P 		217.5
(-3)
P 		320.9
(-0.1)
P 		335.9
(0.3)
P 		216
avr 399.8
(3) 		310.6
(-1.4) 		277.9
(-3) 		279.1
(-2.9) 		357.3
(0.9) 		327.8
(-0.5) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7871
Sequence Type Exemplar sequence
Representative Public ID ZK652.3 NCBI
Target Description ZK652.3 /REP_DB=WormBase Gene ID /WP=CE00449 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066304 NCBI Caenorhabditis elegans ZK652.3 (ZK652.3) mRNA, complete cds. 11/11 None
SNAP00000029629 ENSEMBL cdna:SNAP chromosome:CEL140:III:7858902:7859256:1 11/11 None
GENEFINDER00000029637 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7858902:7859256:1 11/11 None
ZK652.3 ENSEMBL cdna:known chromosome:CEL140:III:7858898:7859436:1 gene:ZK652.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7858899-7859254(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK652.3
Entrez Gene 176100 Entrez gene
SwissProt P34661 EMBL-EBI
WormBase CE00449 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259675_AT expressed protein at
CANINE:1584201_S_AT similar to ubiquitin-fold modifier 1 cfa
CANINE:1584200_AT similar to ubiquitin-fold modifier 1 cfa
CANINE_2:CFA.11736.1.A1_AT similar to ubiquitin-fold modifier 1 cfa
CANINE_2:CFAAFFX.9999.1.S1_S_AT similar to ubiquitin-fold modifier 1 cfa
CHICKEN:GGA.4218.1.S1_AT ubiquitin-fold modifier 1 gga
CHICKEN:GGAAFFX.11480.1.S1_S_AT ubiquitin-fold modifier 1 gga
HG-U133B:222502_S_AT ubiquitin-fold modifier 1 hs
HG-U133_PLUS_2:222502_S_AT ubiquitin-fold modifier 1 hs
HG-U133_PLUS_2:218050_AT ubiquitin-fold modifier 1 hs
HG-U133A:218050_AT ubiquitin-fold modifier 1 hs
HG-U133A_2:218050_AT ubiquitin-fold modifier 1 hs
HU35KSUBA:R17568_AT ubiquitin-fold modifier 1 hs
HU35KSUBB:RC_W52290_AT ubiquitin-fold modifier 1 hs
HUGENEFL:Z70222_AT ubiquitin-fold modifier 1 hs
U133_X3P:G7705299_3P_X_AT ubiquitin-fold modifier 1 hs
U133_X3P:G7705299_3P_AT ubiquitin-fold modifier 1 hs
U133_X3P:G13528782_3P_A_AT ubiquitin-fold modifier 1 hs
HG-U95B:45824_AT ubiquitin-fold modifier 1 hs
HG-U95C:49073_AT ubiquitin-fold modifier 1 hs
HG-U133_PLUS_2:242669_AT Ubiquitin-fold modifier 1 hs
HG-U133B:242669_AT Ubiquitin-fold modifier 1 hs
HG-U95D:85148_AT Ubiquitin-fold modifier 1 hs
U133_X3P:HS.169835.0.A1_3P_AT Ubiquitin-fold modifier 1 hs
MU11KSUBA:AA052239_S_AT ubiquitin-fold modifier 1 mm
MG-U74AV2:94931_AT ubiquitin-fold modifier 1 mm
MG-U74AV2:92189_AT ubiquitin-fold modifier 1 mm
MG-U74AV2:161908_I_AT ubiquitin-fold modifier 1 mm
MG-U74BV2:163694_AT ubiquitin-fold modifier 1 mm
MOE430A:1449263_AT ubiquitin-fold modifier 1 mm
MOUSE430A_2:1449263_AT ubiquitin-fold modifier 1 mm
MOUSE430_2:1449263_AT ubiquitin-fold modifier 1 mm
MOE430A:1418900_AT ubiquitin-fold modifier 1 mm
MOUSE430A_2:1418900_AT ubiquitin-fold modifier 1 mm
MOUSE430_2:1418900_AT ubiquitin-fold modifier 1 mm
MOE430A:1418899_AT ubiquitin-fold modifier 1 mm
MOUSE430A_2:1418899_AT ubiquitin-fold modifier 1 mm
MOUSE430_2:1418899_AT ubiquitin-fold modifier 1 mm
MOE430A:1439028_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MOUSE430A_2:1439028_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MOUSE430_2:1439028_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MG-U74AV2:96739_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MU11KSUBA:AA217850_S_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MU19KSUBA:TC24876_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MU19KSUBA:TC25567_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
MU19KSUBC:TC40742_AT Ubiquitin-fold modifier 1 (Ufm1), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAA28214 Hypothetical protein ZK652.3 [Caenorhabditis elegans] ref|NP_498705.1| ZK652.3 [Caenorhabditis elegans] gb|AAG50218.1| 3H949 [Caenorhabditis elegans] sp|P34661|UFM1_CAEEL Probable ubiquitin-fold modifier 1 precursor pdb|1L7Y|A Chain A, Solution Nmr Structure Of C. Elegans Protein Zk652.3. Northeast Structural Genomics Consortium Target Wr41 9.0E-47
blast XP_783597 PREDICTED: similar to protein similar to human bone marrow protein BM-002 (9.8 kD) (3I949) [Strongylocentrotus purpuratus] 6.0E-38
blast XP_609021 PREDICTED: similar to ubiquitin-fold modifier 1 isoform 1 [Bos taurus] 7.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR005375 EMBL-EBI Protein of unknown function UPF0185 1.7E-56
Sequence
Target Sequence 
>C. ELEGANS:176124_AT
atgtcgggtggaacagcagcaacaactgccggttccaaggtgaccttcaaaatcactcta
acaagtgatccgaagctcccattcaaggtcctctccgtgccggaaagtaccccattcacc
gccgttctcaagtttgccgctgaagaattcaaggtccctgcggctacatcagcaatcatt
acgaacgacggagttggcgtcaatccagctcaacctgccggaaacatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGGGTGGAACAGCAGCAACAA 651 45 13 Antisense
GCAGCAACAACTGCCGGTTCCAAGG 456 301 28 Antisense
TGCCGGTTCCAAGGTGACCTTCAAA 295 585 39 Antisense
TGACCTTCAAAATCACTCTAACAAG 171 567 53 Antisense
TAACAAGTGATCCGAAGCTCCCATT 229 639 71 Antisense
CGTTCTCAAGTTTGCCGCTGAAGAA 634 247 135 Antisense
TGAAGAATTCAAGGTCCCTGCGGCT 50 575 153 Antisense
CCTGCGGCTACATCAGCAATCATTA 596 265 169 Antisense
GCAATCATTACGAACGACGGAGTTG 245 321 184 Antisense
GACGGAGTTGGCGTCAATCCAGCTC 515 375 199 Antisense
CAGCTCAACCTGCCGGAAACATTTT 656 203 218 Antisense
Sequence Source Affymetrix Proprietary Database