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[176120_s_at]

Description E01A2.7 /REP_DB=WormBase Gene ID /WP=CE24874 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 53      6grp_total > 72      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 196.4
(-0.5)
P 		350.8
(2.7)
P 		366.1
(3)
P 		76.6
(-3)
P 		290
B 227
(-0.4)
P 		291.2
(0.8)
P 		416.7
(3)
P 		82
(-3)
P 		335
C 213.1
(-1.4)
P 		300.1
(0.5)
P 		413.2
(3)
P 		137.7
(-3)
P 		276
avr 212.2
(-0.7) 		314
(1.3) 		398.7
(3) 		98.8
(-3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 797
1 2 3 4 5 6 range
A 425.9
(-2.7)
P 		477.7
(-2.2)
P 		968.7
(2)
P 		1091.2
(3)
P 		825.9
(0.7)
P 		384.7
(-3)
P 		707
B 379.7
(-3)
P 		455.8
(-2.4)
P 		762
(-0.1)
P 		1167.8
(3)
P 		997.5
(1.7)
P 		462.1
(-2.4)
P 		788
C 370.6
(-3)
P 		483.5
(-2.1)
P 		813.6
(0.6)
P 		1116.1
(3)
P 		824
(0.6)
P 		468.9
(-2.2)
P 		746
avr 392.1
(-3) 		472.3
(-2.3) 		848.1
(0.7) 		1125
(3) 		882.5
(1) 		438.6
(-2.6) 		733
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 71.5
(1.3)
P 		76.1
(1.6)
P 		95.7
(3)
P 		11.2
(-3)
P 		85
B 72.4
(1.2)
P 		71.9
(1.1)
P 		96.6
(3)
P 		17.5
(-3)
P 		79
C 70.5
(-0.7)
P 		86.3
(0.1)
P 		144
(3)
P 		23.2
(-3)
P 		121
avr 71.5
(0.4) 		78.1
(0.8) 		112.1
(3) 		17.3
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 78.5
(-3)
P 		169.9
(-0.2)
P 		211
(1)
P 		276.7
(3)
P 		249.2
(2.2)
P 		93.7
(-2.5)
P 		198
B 132.1
(-3)
P 		151.7
(-2.6)
P 		185
(-1.8)
P 		309.3
(0.9)
P 		405.3
(3)
P 		172.3
(-2.1)
P 		273
C 137.4
(-3)
P 		147.5
(-2.5)
P 		207.1
(0.2)
P 		224.4
(1)
P 		266.6
(3)
P 		157
(-2.1)
P 		129
avr 116
(-3) 		156.4
(-1.7) 		201
(-0.3) 		270.1
(1.8) 		307
(3) 		141
(-2.2) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176120_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2198
Sequence Type Exemplar sequence
Representative Public ID E01A2.7 NCBI
Target Description E01A2.7 /REP_DB=WormBase Gene ID /WP=CE24874 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058905 NCBI Caenorhabditis elegans E01A2.7 (E01A2.7) mRNA, complete cds. 11/11 None
SNAP00000008541 ENSEMBL cdna:SNAP chromosome:CEL140:I:4142344:4144568:-1 11/11 None
GENEFINDER00000008598 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4142344:4144568:-1 11/11 None
E01A2.7 ENSEMBL cdna:known chromosome:CEL140:I:4142344:4144584:-1 gene:E01A2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4142343-4144568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01A2.7
Entrez Gene 171999 Entrez gene
SwissProt Q966L1 EMBL-EBI
WormBase CE24874 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601981_AT similar to paraoxonase 3 cfa
CANINE:1598813_AT similar to paraoxonase 3 cfa
CANINE_2:CFA.14562.1.A1_AT similar to paraoxonase 3 cfa
CANINE_2:CFAAFFX.4084.1.S1_AT similar to paraoxonase 3 cfa
HU35KSUBA:RC_AA256367_S_AT paraoxonase 3 hs
HU35KSUBA:T57140_S_AT paraoxonase 3 hs
HUGENEFL:L48516_AT paraoxonase 3 hs
U133_X3P:HS.296259.0.S1_3P_AT paraoxonase 3 hs
HG-U133A_2:213695_AT paraoxonase 3 hs
HG-U133_PLUS_2:213695_AT paraoxonase 3 hs
HG-U133A:213695_AT paraoxonase 3 hs
HG-U95AV2:41424_AT paraoxonase 3 hs
MU11KSUBB:MSA.2122.0_S_AT paraoxonase 3 mm
MG-U74AV2:93940_AT paraoxonase 3 mm
MG-U74BV2:105393_AT paraoxonase 3 mm
MG-U74CV2:137604_AT paraoxonase 3 mm
MOE430A:1419298_AT paraoxonase 3 mm
MOUSE430A_2:1419298_AT paraoxonase 3 mm
MOUSE430_2:1419298_AT paraoxonase 3 mm
RG-U34C:RC_AA818163_AT paraoxonase 3 rn
RAE230B:1384544_AT paraoxonase 3 rn
RAT230_2:1384544_AT paraoxonase 3 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4064 arylesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85464 Hypothetical protein E01A2.7 [Caenorhabditis elegans] ref|NP_491306.1| E01A2.7 [Caenorhabditis elegans] 0.0
blast CAE66713 Hypothetical protein CBG12059 [Caenorhabditis briggsae] 1.0E-152
blast CAE66714 Hypothetical protein CBG12060 [Caenorhabditis briggsae] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR002640 EMBL-EBI Arylesterase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491306.1 1 5-27
E01A2.7 1 5-27
SNAP00000008541 1 5-27
GENEFINDER00000008598 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:176120_S_AT
ctggggagaactcattcctcgtatcgaatgatggtggagctcagacagcattgggaaacg
tttgggagattttaagtggtttttataaaggaggattagtgtattataatggaaagaaat
ctcaattcctcatggaaaacaatattgccaatggaataatcttatctcgggaccagaaaa
ctctattcgtttctcatatcaaccaggagacgataggagtgtacacttggaatcaaaaag
acggagagattcaaaaaatttctgaaattgaaactctcactggatgcgataacttctacg
tggacactcaggatcatctttgggcaggttgtcatccagttgtgaaggacgctgccggcc
atctcggaaatgtttctgattcgacactttatggaccatctcaagttctgcgagtttctt
tttcgaaggatctgaagacggcggagattgttgaagttttggctgatgatggaagattcg
tcagtgcgagtacaattgcaattccgtttgatgacgggaaacaaatgattgttggtacag
tagcccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGGGAGAACTCATTCCTCGTATC 180 239 524 Antisense
ACTCTATTCGTTTCTCATATCAACC 109 101 703 Antisense
AACTCTCACTGGATGCGATAACTTC 383 141 795 Antisense
CGATAACTTCTACGTGGACACTCAG 348 249 810 Antisense
GGACACTCAGGATCATCTTTGGGCA 58 527 825 Antisense
TTGGGCAGGTTGTCATCCAGTTGTG 405 709 843 Antisense
TCCAGTTGTGAAGGACGCTGCCGGC 156 591 858 Antisense
CTGCCGGCCATCTCGGAAATGTTTC 120 233 875 Antisense
GATTCGACACTTTATGGACCATCTC 483 433 901 Antisense
GGACCATCTCAAGTTCTGCGAGTTT 69 523 916 Antisense
ATGATTGTTGGTACAGTAGCCCGCC 437 45 1048 Antisense
Sequence Source Affymetrix Proprietary Database