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[176119_at]

Description Y65B4A.H /REP_DB=WormBase Gene ID /WP=CE22731 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 74      6grp_total > 71      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1449
1 2 3 4 range
A 598.9
(-2.7)
P 		556
(-3)
P 		568.4
(-2.9)
P 		1446.8
(3)
P 		891
B 613.5
(-3)
P 		610.2
(-3)
P 		639.8
(-2.9)
P 		2005.3
(3)
P 		1395
C 728.5
(-2.5)
P 		636
(-3)
P 		761.5
(-2.4)
P 		1830.8
(3)
P 		1195
avr 647
(-2.8) 		600.7
(-3) 		656.6
(-2.7) 		1761
(3) 		1160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 569.1
(-3)
P 		646.8
(-0.9)
P 		736.6
(1.6)
P 		788.9
(3)
P 		671.8
(-0.2)
P 		669.8
(-0.3)
P 		220
B 676
(-3)
P 		785.7
(1.5)
P 		726.1
(-1)
P 		822.9
(3)
P 		745
(-0.2)
P 		676.4
(-3)
P 		147
C 822.9
(3)
P 		723.1
(-1.7)
P 		785.6
(1.2)
P 		732.9
(-1.2)
P 		800.4
(1.9)
P 		695.7
(-3)
P 		127
avr 689.3
(-2.5) 		718.5
(-0.7) 		749.4
(1.1) 		781.6
(3) 		739.1
(0.5) 		680.6
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 218.1
(3)
P 		120.7
(-3)
P 		148.6
(-1.3)
P 		211.8
(2.6)
P 		97
B 195.6
(-2)
P 		150.7
(-2.9)
P 		148.3
(-3)
P 		427.3
(3)
P 		279
C 241.2
(-0.2)
P 		182.9
(-3)
P 		265.4
(0.9)
P 		308.7
(3)
P 		126
avr 218.3
(-0.6) 		151.4
(-3) 		187.4
(-1.7) 		315.9
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 104.9
(-3)
P 		230
(3)
P 		160.4
(-0.3)
P 		200.1
(1.6)
P 		202.7
(1.7)
P 		163.1
(-0.2)
P 		125
B 235.2
(-0.2)
P 		261.5
(1)
P 		176.3
(-3)
P 		218
(-1)
P 		302.7
(3)
P 		252.2
(0.6)
P 		126
C 305
(3)
P 		220.6
(-0.2)
P 		199.9
(-1)
P 		147.4
(-3)
P 		259
(1.2)
P 		232.9
(0.3)
P 		158
avr 215
(-0.1) 		237.4
(1.6) 		178.9
(-3) 		188.5
(-2.2) 		254.8
(3) 		216.1
(-0.1) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18833
Sequence Type Exemplar sequence
Representative Public ID Y65B4A.H NCBI
Target Description Y65B4A.H /REP_DB=WormBase Gene ID /WP=CE22731 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058361 NCBI Caenorhabditis elegans Y65B4A.3 (Y65B4A.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000032549 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:636939:637810:1 11/11 None
Y65B4A.3 ENSEMBL cdna:known chromosome:CEL140:I:636865:638275:1 gene:Y65B4A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032533 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:636938-637810(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4A.3
Entrez Gene 171654 Entrez gene
SwissProt Q9BL60 EMBL-EBI
WormBase CE22731 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247302_AT SNF7 family protein at
CANINE_2:CFA.21067.1.S1_AT similar to chromatin modifying protein 6 cfa
CANINE_2:CFAAFFX.9501.1.S1_S_AT similar to chromatin modifying protein 6 cfa
DROSOPHILA_2:1635121_A_AT dm
DROSGENOME1:147687_AT dm
HU35KSUBA:RC_AA427638_AT chromatin modifying protein 6 hs
HG-U133A:218743_AT chromatin modifying protein 6 hs
HG-U133_PLUS_2:218743_AT chromatin modifying protein 6 hs
HG-U133A_2:218743_AT chromatin modifying protein 6 hs
U133_X3P:G13375782_3P_AT chromatin modifying protein 6 hs
HG-U95B:56326_AT chromatin modifying protein 6 hs
MG-U74AV2:96097_AT chromatin modifying protein 6 mm
MOE430A:1433684_AT chromatin modifying protein 6 mm
MOUSE430A_2:1433684_AT chromatin modifying protein 6 mm
MOUSE430_2:1433684_AT chromatin modifying protein 6 mm
MU19KSUBB:TC32060_AT PREDICTED: hypothetical protein XP_126613 [Mus musculus], mRNA sequence mm
MU19KSUBB:TC34092_AT PREDICTED: hypothetical protein XP_126613 [Mus musculus], mRNA sequence mm
RG-U34B:RC_AA944274_AT similar to hypothetical protein FLJ11749 rn
RAE230A:1388510_AT similar to hypothetical protein FLJ11749 rn
RAT230_2:1388510_AT similar to hypothetical protein FLJ11749 rn
YEAST_2:1773106_AT Myristoylated subunit of ESCRTIII, the endosomal sorting complex required for transport of transmembrane proteins into the multivesicular body pathway to the lysosomal/vacuolar lumen; cytoplasmic protein recruited to endosomal membranes Sc
Protein Similarities
Method ID Description E-Value
blast AAK29955 Hypothetical protein Y65B4A.3 [Caenorhabditis elegans] ref|NP_490762.1| Y65B4A.3 [Caenorhabditis elegans] 3.0E-83
blast CAE61309 Hypothetical protein CBG05144 [Caenorhabditis briggsae] 6.0E-71
blast CAG03061 unnamed protein product [Tetraodon nigroviridis] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 1.2E-59
Sequence
Target Sequence 
>C. ELEGANS:176119_AT
gaaatcaccaaaatcggcgccggtttccgatcaggataatgcgattttggcgctcaaaac
acaacgggacaaaatgaagcaaatgatcaagcgaaaagagaattgtttggagaaggaacg
acaattggcaaagcagcttataaaggatggccggaaagaccgtgctttactgcttctgaa
gaagaaacgctaccaagagaagattatcgatcaaaccttgaaccatcttagcaaaatcga
gcaaatggtaaatgacctagaattcgcagaagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCACCAAAATCGGCGCCGGTT 98 363 39 Antisense
GCGCCGGTTTCCGATCAGGATAATG 246 287 55 Antisense
AGGATAATGCGATTTTGGCGCTCAA 421 57 71 Antisense
TGGCGCTCAAAACACAACGGGACAA 649 539 86 Antisense
GGAACGACAATTGGCAAAGCAGCTT 651 529 153 Antisense
AGGATGGCCGGAAAGACCGTGCTTT 524 49 182 Antisense
CGGAAAGACCGTGCTTTACTGCTTC 701 241 190 Antisense
GAAACGCTACCAAGAGAAGATTATC 111 359 222 Antisense
GATCAAACCTTGAACCATCTTAGCA 500 421 247 Antisense
GAACCATCTTAGCAAAATCGAGCAA 75 345 258 Antisense
ATGACCTAGAATTCGCAGAAGTTCA 503 41 290 Antisense
Sequence Source Affymetrix Proprietary Database