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[176118_at]

Description R13A5.6 /REP_DB=WormBase Gene ID /WP=CE01378 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 21      6grp_total > 23      4grp_total > 41      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 463
1 2 3 4 range
A 967.1
(-3)
P 		1421.2
(3)
P 		1273.4
(1)
P 		1392.3
(2.6)
P 		454
B 1033.9
(-2.9)
P 		1332.9
(2.5)
P 		1360.9
(3)
P 		1027.1
(-3)
P 		334
C 1247.9
(-0.7)
P 		1429.8
(3)
P 		1336.1
(1.1)
P 		1134.3
(-3)
P 		296
avr 1083
(-3) 		1394.6
(3) 		1323.5
(1.6) 		1184.6
(-1) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1064
1 2 3 4 5 6 range
A 1593
(2.1)
P 		1396.3
(1)
P 		1746.6
(3)
P 		1518.6
(1.7)
P 		683.1
(-3)
P 		863.3
(-2)
P 		1064
B 1574.6
(2.5)
P 		1657.4
(3)
P 		1639.6
(2.9)
P 		1020.1
(-1.2)
P 		737.6
(-3)
P 		1108.2
(-0.6)
P 		920
C 1674
(3)
P 		1429
(1.1)
P 		1161.3
(-0.9)
P 		1055
(-1.7)
P 		887.3
(-3)
P 		1028.1
(-1.9)
P 		787
avr 1613.9
(3) 		1494.2
(2.1) 		1515.8
(2.3) 		1197.9
(0) 		769.3
(-3) 		999.9
(-1.4) 		845
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 352.1
(3)
P 		308.5
(1.2)
P 		332.9
(2.2)
P 		203.8
(-3)
P 		148
B 329.7
(3)
P 		329.2
(3)
P 		315.4
(2.2)
P 		218.9
(-3)
P 		111
C 413.1
(1.8)
P 		411.1
(1.8)
P 		465.7
(3)
P 		191.3
(-3)
P 		274
avr 365
(2.8) 		349.6
(2.2) 		371.3
(3) 		204.7
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 293.7
(-1.2)
P 		496.6
(3)
P 		380.4
(0.6)
P 		385.2
(0.7)
P 		206.1
(-3)
P 		210.2
(-2.9)
P 		291
B 547.9
(2.9)
P 		551.7
(3)
P 		398.2
(-0.3)
P 		270.2
(-3)
P 		299.7
(-2.4)
P 		413.3
(0.1)
P 		282
C 620.5
(3)
P 		436
(0.3)
P 		295.6
(-1.8)
P 		212.2
(-3)
P 		287.1
(-1.9)
P 		344.2
(-1.1)
P 		408
avr 487.4
(2.8) 		494.8
(3) 		358.1
(-0.6) 		289.2
(-2.4) 		264.3
(-3) 		322.6
(-1.5) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6378
Sequence Type Exemplar sequence
Representative Public ID R13A5.6 NCBI
Target Description R13A5.6 /REP_DB=WormBase Gene ID /WP=CE01378 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066256 NCBI Caenorhabditis elegans R13A5.6 (R13A5.6) mRNA, complete cds. 11/11 None
SNAP00000038244 ENSEMBL cdna:SNAP chromosome:CEL140:III:7564473:7565263:-1 11/11 None
GENEFINDER00000038256 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7564511:7565263:-1 11/11 None
R13A5.6 ENSEMBL cdna:known chromosome:CEL140:III:7564473:7565263:-1 gene:R13A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7564470-7565261(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13A5.6
Entrez Gene 187856 Entrez gene
SwissProt Q95Y93 EMBL-EBI
WormBase CE01378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84467 Hypothetical protein R13A5.6 [Caenorhabditis elegans] ref|NP_498657.1| R13A5.6 [Caenorhabditis elegans] 2.0E-74
blast CAE64449 Hypothetical protein CBG09156 [Caenorhabditis briggsae] 4.0E-69
blast AAK84467 Hypothetical protein R13A5.6 [Caenorhabditis elegans] ref|NP_498657.1| R13A5.6 [Caenorhabditis elegans] 1.0E-66
blast CAE64449 Hypothetical protein CBG09156 [Caenorhabditis briggsae] 2.0E-61
blast AAP82637 Hypothetical protein T19C3.9 [Caenorhabditis elegans] ref|NP_001022770.1| T19C3.9 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 3.7E-65
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.3E-55
Sequence
Target Sequence 
>C. ELEGANS:176118_AT
tctccttgcagttcctacagtaattctggcgttgggaagaacgcaatcagttggagtcaa
aggacagcttatatgcgaagataaaccagctgttggagttaaaattaaaatttatgatga
agataaactgtccccagatgagcttatggtatctggaaagactgattcctcgggaagatt
tgacttgaagggaagtgcagatgaattcacatcgattgaaccaaaaatcaatatctacca
tgactgtgatgatggaattaaaccttgccagagaaagatcacagtttatattccatctca
atacatctcaagtggaaaagatccaaagaagattttcgatttcggaactctccaattggc
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCTTGCAGTTCCTACAGTAATT 682 609 30 Antisense
GAGTCAAAGGACAGCTTATATGCGA 651 397 83 Antisense
ATATGCGAAGATAAACCAGCTGTTG 256 21 100 Antisense
TGATGAAGATAAACTGTCCCCAGAT 210 567 144 Antisense
AACTGTCCCCAGATGAGCTTATGGT 335 143 155 Antisense
GTATCTGGAAAGACTGATTCCTCGG 385 453 178 Antisense
GATTCCTCGGGAAGATTTGACTTGA 544 433 193 Antisense
CAATATCTACCATGACTGTGATGAT 219 179 258 Antisense
GATGATGGAATTAAACCTTGCCAGA 264 411 277 Antisense
ATCACAGTTTATATTCCATCTCAAT 13 29 307 Antisense
GATTTCGGAACTCTCCAATTGGCTG 188 429 367 Antisense
Sequence Source Affymetrix Proprietary Database