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[176117_at]

Description T01B6.1 /REP_DB=WormBase Gene ID /WP=CE12880 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 7
(-3)
A 		14.6
(-2.4)
A 		35.4
(-0.6)
A 		78.4
(3)
A 		71
B 41.3
(3)
M 		17
(-1)
A 		5
(-2.9)
A 		4.4
(-3)
A 		37
C 9.9
(-2.4)
A 		5.8
(-3)
A 		21.5
(-0.6)
A 		44.6
(3)
A 		39
avr 19.4
(-1.6) 		12.5
(-3) 		20.6
(-1.4) 		42.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 83.6
(3)
A 		4.7
(-3)
A 		28
(-1.2)
A 		19.9
(-1.8)
A 		17.9
(-2)
A 		9.1
(-2.7)
A 		79
B 11.7
(-2.6)
A 		36.3
(0.4)
A 		48.6
(1.9)
A 		58
(3)
A 		8.8
(-3)
A 		15.3
(-2.2)
A 		49
C 8.2
(-2.5)
A 		66
(3)
P 		45
(1)
A 		64.4
(2.8)
A 		6.4
(-2.7)
A 		3
(-3)
A 		63
avr 34.5
(1) 		35.7
(1.2) 		40.5
(1.9) 		47.4
(3) 		11
(-2.7) 		9.1
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.6
(-3)
A 		3.2
(-2.6)
A 		9.2
(1.4)
A 		11.5
(3)
A 		9
B 13.2
(3)
M 		4.2
(-1.4)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		12
C 3.3
(-1.3)
A 		1.7
(-3)
A 		7.5
(3)
A 		7.5
(3)
A 		6
avr 6.4
(2.7) 		3
(-3) 		5.9
(1.8) 		6.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 15.4
(3)
A 		1.7
(-3)
A 		6.1
(-1.1)
A 		5
(-1.6)
A 		5.4
(-1.4)
A 		2.2
(-2.8)
A 		14
B 4.1
(-2.7)
A 		12.1
(1.3)
A 		11.8
(1.2)
A 		15.4
(3)
A 		3.6
(-3)
A 		5.7
(-1.9)
A 		12
C 3
(-2.4)
A 		20.1
(3)
P 		11.4
(0.3)
A 		12.9
(0.7)
A 		2.1
(-2.7)
A 		1
(-3)
A 		19
avr 7.5
(0.3) 		11.3
(3) 		9.8
(1.9) 		11.1
(2.9) 		3.7
(-2.5) 		3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18467
Sequence Type Exemplar sequence
Representative Public ID T01B6.1 NCBI
Target Description T01B6.1 /REP_DB=WormBase Gene ID /WP=CE12880 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076021 NCBI Caenorhabditis elegans T01B6.1 (T01B6.1) mRNA, complete cds. 11/11 None
SNAP00000036312 ENSEMBL cdna:SNAP chromosome:CEL140:X:2335812:2337550:1 11/11 None
GENEFINDER00000036314 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2335812:2337852:1 11/11 None
T01B6.1 ENSEMBL cdna:known chromosome:CEL140:X:2335812:2345765:1 gene:T01B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2335811-2337619(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B6.1
Entrez Gene 187927 Entrez gene
WormBase CE37141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508422 T01B6.1 [Caenorhabditis elegans] 1.0E-122
blast NP_508422 T01B6.1 [Caenorhabditis elegans] 1.0E-78
blast T25855 hypothetical protein T01B6.1 - Caenorhabditis elegans 1.0E-78
blast NP_508422 T01B6.1 [Caenorhabditis elegans] 4.0E-78
blast T25855 hypothetical protein T01B6.1 - Caenorhabditis elegans 4.0E-78
blast T25855 hypothetical protein T01B6.1 - Caenorhabditis elegans 2.0E-77
blast CAE58892 Hypothetical protein CBG02137 [Caenorhabditis briggsae] 2.0E-75
blast CAE58892 Hypothetical protein CBG02137 [Caenorhabditis briggsae] 5.0E-75
Sequence
Target Sequence 
>C. ELEGANS:176117_AT
caacccccgtcaatgggactcaatggatttggcagaagaagtcacaacttttcatcgccg
tctctcgtcgattacagatctcagccgcatcattacggatcccaaccaagcatagtacag
aacggaggaagccagtctccaccagactacgccttattgttcgacgcaccagttgttgtt
ctcagatctaaaaagccaagcaccgtacgatcagcaaaagaagaatcaaggctacgatct
caacagccaccaagcaacattcaacgagttcaggcaatccgtagccgtccacagtccact
gcatcttacaacagtttagcttcatccggaatggaaaatctccagtggcgaaattcagtt
atgtcctctgtgactccagataatcgccggcatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCCCCGTCAATGGGACTCAATG 394 185 16 Antisense
TCGTCGATTACAGATCTCAGCCGCA 539 605 80 Antisense
CTCAGCCGCATCATTACGGATCCCA 265 229 95 Antisense
AGACTACGCCTTATTGTTCGACGCA 228 61 159 Antisense
GCACCAGTTGTTGTTCTCAGATCTA 659 313 181 Antisense
AAAAGCCAAGCACCGTACGATCAGC 317 131 206 Antisense
CGAGTTCAGGCAATCCGTAGCCGTC 563 249 280 Antisense
TCCACAGTCCACTGCATCTTACAAC 289 589 303 Antisense
ACAACAGTTTAGCTTCATCCGGAAT 167 113 323 Antisense
TTCAGTTATGTCCTCTGTGACTCCA 26 689 369 Antisense
TGACTCCAGATAATCGCCGGCATAC 68 571 386 Antisense
Sequence Source Affymetrix Proprietary Database