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[176116_at]

Description F09G8.5 /REP_DB=WormBase Gene ID /WP=CE00526 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 01      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 60.9
(-3)
A 		117.5
(3)
A 		108.8
(2.1)
A 		107.3
(1.9)
A 		57
B 66.1
(0.7)
A 		44.3
(-2.5)
A 		41.2
(-3)
A 		81.5
(3)
A 		40
C 90.5
(3)
A 		44.6
(-3)
A 		72.7
(0.7)
A 		90.2
(3)
M 		46
avr 72.5
(-2.1) 		68.8
(-3) 		74.2
(-1.7) 		93
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 87.7
(2.6)
A 		93.6
(3)
A 		93.8
(3)
A 		31.5
(-1.4)
A 		8
(-3)
A 		44.1
(-0.5)
A 		86
B 91.9
(2.3)
A 		99.6
(3)
A 		99.7
(3)
A 		42.7
(-2)
A 		34
(-2.7)
A 		30.9
(-3)
A 		69
C 74.8
(-0.2)
A 		146
(3)
A 		80.2
(0.1)
A 		61.4
(-0.7)
A 		10.5
(-3)
A 		52.5
(-1.1)
A 		136
avr 84.8
(1.2) 		113.1
(3) 		91.2
(1.6) 		45.2
(-1.3) 		17.5
(-3) 		42.5
(-1.4) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.2
(0.1)
A 		25.5
(1.6)
A 		28.4
(3)
A 		15.7
(-3)
A 		13
B 21.1
(3)
A 		11
(-2.2)
A 		9.5
(-3)
A 		17.4
(1.1)
A 		12
C 30
(3)
A 		12.8
(-3)
A 		25.3
(1.4)
A 		15.2
(-2.2)
M 		17
avr 24.4
(3) 		16.4
(-2.8) 		21.1
(0.6) 		16.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 16.2
(-0.3)
A 		33.3
(3)
A 		20.4
(0.5)
A 		8
(-1.9)
A 		2.4
(-3)
A 		10.7
(-1.4)
A 		31
B 32
(2.7)
A 		33.1
(3)
A 		24.2
(0.6)
A 		11.3
(-3)
A 		13.8
(-2.3)
A 		11.5
(-2.9)
A 		22
C 27.7
(0.5)
A 		44.5
(3)
A 		20.4
(-0.5)
A 		12.4
(-1.7)
A 		3.4
(-3)
A 		17.6
(-0.9)
A 		41
avr 25.3
(0.7) 		37
(3) 		21.7
(-0) 		10.6
(-2.2) 		6.5
(-3) 		13.3
(-1.7) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8017
Sequence Type Exemplar sequence
Representative Public ID F09G8.5 NCBI
Target Description F09G8.5 /REP_DB=WormBase Gene ID /WP=CE00526 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066411 NCBI Caenorhabditis elegans F09G8.5 (F09G8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000034511 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8251893:8257501:1 10/11 None
SNAP00000034497 ENSEMBL cdna:SNAP chromosome:CEL140:III:8255191:8257501:1 10/11 None
F09G8.5 ENSEMBL cdna:known chromosome:CEL140:III:8254891:8257501:1 gene:F09G8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8254886-8257497(+) 96.63 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G8.5
Entrez Gene 184268 Entrez gene
SwissProt P34390 EMBL-EBI
WormBase CE00526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498812 F09G8.5 [Caenorhabditis elegans] gb|AAA28010.2| Hypothetical protein F09G8.5 [Caenorhabditis elegans] sp|P34390|YLS5_CAEEL Hypothetical protein F09G8.5 in chromosome III 0.0
blast S44798 F09G8.5 protein - Caenorhabditis elegans 0.0
blast AAA27916 Kinetochore null protein 1 [Caenorhabditis elegans] ref|NP_498811.1| Kinetochore NuLl family member (knl-1) [Caenorhabditis elegans] sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III 0.0
blast CAE56927 Hypothetical protein CBG24772 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.67
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.027
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.67
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.027
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.67
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.027
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498812.1 1 5-27
F09G8.5 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:176116_AT
caacctcaacttctacactttggggatacttcagatgaagaaagaacaacatatccagct
agatcattttctgtagaagttcccggtttaccgcttacagaagatcatacaactgtctat
ttggatagtgctccacaatctcacatagggtcaagacacaatttgatgtctcaatctatg
tatggaacactttgtggcacgttagcagaggaaccaagttcagctgatggagaagatgat
tggaatgattttagctcaattttccaaacacaaaagtggtctctaccaaccgttaggcat
gtagataggccgacgggcatgagcatagaagaagatcgagttatggttcaaatgcctcta
gcagcttctcacagaatgtaccaaagtatgcatgagggaatggttatagaaatgaaacga
ccacctgtatacggtagaagtgtgagcatgccacgccggcgagcaacaaatctcacaacg
cgagcaagttcaatgagccccgcaagagagcagagactcacaaagataatgtcagcagtt
tcggttttacttgatgaacttgacactgatggtcttcggcaggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCTCAACTTCTACACTTTGGGG 288 187 844 Antisense
TGCTCCACAATCTCACATAGGGTCA 113 583 972 Antisense
GGAACACTTTGTGGCACGTTAGCAG 560 527 1027 Antisense
GTCTCTACCAACCGTTAGGCATGTA 688 467 1122 Antisense
TCAAATGCCTCTAGCAGCTTCTCAC 472 629 1191 Antisense
GAAACGACCACCTGTATACGGTAGA 77 359 1257 Antisense
GTAGAAGTGTGAGCATGCCACGCCG 552 453 1277 Antisense
GCCGGCGAGCAACAAATCTCACAAC 492 283 1298 Antisense
ACGCGAGCAAGTTCAATGAGCCCCG 155 91 1321 Antisense
TGAGCCCCGCAAGAGAGCAGAGACT 297 565 1337 Antisense
GACACTGATGGTCTTCGGCAGGTTG 349 365 1405 Antisense
Sequence Source Affymetrix Proprietary Database