[Home] | [Total List]

[176115_at]

Description Y105E8B.R /REP_DB=WormBase Gene ID /WP=CE25168 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 34      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 79.5
(-3)
A 		98.1
(0.2)
A 		97.4
(0)
P 		114.8
(3)
A 		35
B 80.1
(3)
A 		59.4
(-2.9)
A 		59.1
(-3)
A 		78.9
(2.7)
A 		21
C 62.9
(-2.5)
A 		74
(-1.1)
A 		58.3
(-3)
A 		109.2
(3)
A 		51
avr 74.2
(-2.5) 		77.2
(-1.9) 		71.6
(-3) 		101
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 63.5
(2.7)
A 		49.6
(0.8)
A 		65.7
(3)
A 		21.1
(-3)
A 		31.7
(-1.6)
A 		49.7
(0.8)
A 		45
B 49.6
(1.6)
A 		42.3
(-1)
A 		38.3
(-2.4)
A 		40.6
(-1.6)
A 		53.5
(3)
A 		36.7
(-3)
A 		17
C 65.4
(3)
A 		64
(2.7)
M 		58.8
(1.6)
P 		58.6
(1.6)
A 		42.9
(-1.7)
A 		36.8
(-3)
A 		29
avr 59.5
(3) 		52
(0.7) 		54.3
(1.4) 		40.1
(-3) 		42.7
(-2.2) 		41.1
(-2.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 28.9
(3)
A 		21.3
(-0.8)
A 		25.5
(1.3)
P 		16.8
(-3)
A 		12
B 25.5
(3)
A 		14.7
(-2.5)
A 		13.7
(-3)
A 		16.8
(-1.4)
A 		12
C 20.8
(2)
A 		21.3
(3)
A 		20.3
(0.9)
A 		18.4
(-3)
A 		3
avr 25.1
(3) 		19.1
(-1.6) 		19.8
(-1.1) 		17.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.7
(0.1)
A 		17.6
(3)
A 		14.3
(1.4)
A 		5.3
(-3)
A 		9.6
(-0.9)
A 		12.1
(0.3)
A 		12
B 17.3
(0.9)
A 		14.1
(-0.7)
A 		9.3
(-3)
A 		10.7
(-2.3)
A 		21.7
(3)
A 		13.7
(-0.9)
A 		12
C 24.3
(3)
A 		19.5
(0.7)
M 		15
(-1.5)
P 		11.8
(-3)
A 		13.9
(-2)
A 		12.3
(-2.8)
A 		13
avr 17.8
(3) 		17.1
(2.5) 		12.9
(-0.5) 		9.3
(-3) 		15.1
(1.1) 		12.7
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18814
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.R NCBI
Target Description Y105E8B.R /REP_DB=WormBase Gene ID /WP=CE25168 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170947 NCBI Caenorhabditis elegans Y105E8A.14 (Y105E8A.14) mRNA, complete cds. 11/11 None
SNAP00000013342 ENSEMBL cdna:SNAP chromosome:CEL140:I:14474360:14476324:-1 11/11 None
GENEFINDER00000013494 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14474360:14476324:-1 11/11 None
Y105E8A.14 ENSEMBL cdna:known chromosome:CEL140:I:14475680:14476332:-1 gene:Y105E8A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14474290-14476255(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.14
Entrez Gene 173308 Entrez gene
SwissProt Q8WQB0 EMBL-EBI
WormBase CE29833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21663 Hypothetical protein Y105E8A.14 [Caenorhabditis elegans] ref|NP_740943.1| Y105E8A.14 [Caenorhabditis elegans] 3.0E-99
blast CAD21663 Hypothetical protein Y105E8A.14 [Caenorhabditis elegans] ref|NP_740943.1| Y105E8A.14 [Caenorhabditis elegans] 4.0E-88
blast CAE64137 Hypothetical protein CBG08753 [Caenorhabditis briggsae] 2.0E-61
blast CAE64137 Hypothetical protein CBG08753 [Caenorhabditis briggsae] 5.0E-53
blast CAB02861 Hypothetical protein C55A6.1 [Caenorhabditis elegans] ref|NP_505917.2| C55A6.1 [Caenorhabditis elegans] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.7E-6
Pfam IPR004170 EMBL-EBI WWE domain 8.1E-17
Pfam IPR004170 EMBL-EBI WWE domain 3.8E-19
Sequence
Target Sequence 
>C. ELEGANS:176115_AT
gtgtgctattccgagatgatccttcccaccacaatcccatcgtgcggtcacaagttctgc
ttcatatgcctcaagggtgtcagcgtgtcgaacaacggagactgcccgatctgccgtggc
ccaatcgactcacagatcttcaagaagccactgcaggccgttgatctgaagatggatatt
ccagggactccttcagcagcagccccagatccagtagtgaagcaagaagtcgatgacgaa
gacgtgaagccagacgtgaaaaagcttcaagaagaactcaaaaaacagcaggcagctgct
gcagctcagaaaatgttctggctataccgtggacgtcatcagggatggtggagattcgat
ccacgtattgagaaggaaatcgaggaagcattcacacatcagatgccgatgacagaagtg
acaatctgtgggaatccgtatatcgtcgatttctcgcaaatgtgccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGCTATTCCGAGATGATCCTTC 27 489 88 Antisense
CCATCGTGCGGTCACAAGTTCTGCT 423 271 124 Antisense
CAAGTTCTGCTTCATATGCCTCAAG 77 185 138 Antisense
CCTCAAGGGTGTCAGCGTGTCGAAC 226 251 156 Antisense
GAACAACGGAGACTGCCCGATCTGC 43 353 177 Antisense
CCCAATCGACTCACAGATCTTCAAG 30 257 207 Antisense
TCAAGAAGCCACTGCAGGCCGTTGA 479 629 227 Antisense
GATGGATATTCCAGGGACTCCTTCA 80 407 258 Antisense
ATGTTCTGGCTATACCGTGGACGTC 190 47 400 Antisense
GGGAATCCGTATATCGTCGATTTCT 704 491 517 Antisense
GTCGATTTCTCGCAAATGTGCCAGT 46 473 532 Antisense
Sequence Source Affymetrix Proprietary Database