[Home] | [Total List]

[176114_s_at]

Description Y65B4A.A /REP_DB=WormBase Gene ID /WP=CE22732 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 95      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 13.1
(-1.8)
A 		6.6
(-3)
A 		40.2
(3)
A 		26
(0.5)
A 		34
B 26.3
(0.1)
A 		43.7
(3)
A 		13.1
(-2.1)
A 		7.4
(-3)
A 		36
C 19.7
(-3)
A 		25.2
(-2.5)
A 		47.5
(-0.3)
A 		81.1
(3)
A 		61
avr 19.7
(-3) 		25.2
(-1.2) 		33.6
(1.5) 		38.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 6.5
(-3)
A 		7.3
(-2.9)
A 		28.6
(-1)
A 		45.1
(0.5)
A 		72.1
(3)
A 		45.8
(0.6)
A 		66
B 7.6
(-3)
A 		12.2
(-2.3)
A 		8
(-2.9)
A 		16.4
(-1.7)
A 		47.4
(3)
A 		39.4
(1.8)
A 		40
C 15
(-1.8)
A 		22.6
(-0.9)
A 		5.7
(-3)
A 		35.5
(0.7)
A 		7.1
(-2.8)
A 		53.9
(3)
A 		48
avr 9.7
(-3) 		14
(-2.3) 		14.1
(-2.3) 		32.3
(0.7) 		42.2
(2.3) 		46.4
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.8
(-0.8)
A 		1.4
(-3)
A 		10.5
(3)
A 		3.8
(-1.4)
A 		9
B 8.4
(1.4)
A 		10.8
(3)
A 		3
(-2.1)
A 		1.6
(-3)
A 		9
C 6.5
(-3)
A 		7.2
(-2.6)
A 		16.6
(3)
A 		13.7
(1.3)
A 		10
avr 6.6
(-2.7) 		6.5
(-2.8) 		10
(3) 		6.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.6
(-2.6)
A 		6.2
(-1.5)
A 		11.4
(-0)
A 		21.8
(3)
A 		11.1
(-0.1)
A 		21
B 2.6
(-2.8)
A 		4.1
(-2.2)
A 		1.9
(-3)
A 		4.4
(-2.1)
A 		19.3
(3)
A 		14.7
(1.4)
A 		17
C 5.6
(-1.5)
A 		6.9
(-1)
A 		1.5
(-3)
A 		7.1
(-1)
A 		2.3
(-2.7)
A 		18
(3)
A 		17
avr 3.1
(-3) 		4.5
(-2.3) 		3.2
(-2.9) 		7.6
(-0.7) 		14.5
(2.9) 		14.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176114_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18867
Sequence Type Exemplar sequence
Representative Public ID Y65B4A.A NCBI
Target Description Y65B4A.A /REP_DB=WormBase Gene ID /WP=CE22732 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058366 NCBI Caenorhabditis elegans Y65B4A.9 (Y65B4A.9) mRNA, complete cds. 11/11 None
SNAP00000032539 ENSEMBL cdna:SNAP chromosome:CEL140:I:664444:669572:-1 9/11 None
GENEFINDER00000032540 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:664444:666809:-1 9/11 None
Y65B4A.9 ENSEMBL cdna:known chromosome:CEL140:I:663627:666850:-1 gene:Y65B4A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032543 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:663626-666809(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4A.9
Entrez Gene 171658 Entrez gene
SwissProt Q9BL55 EMBL-EBI
WormBase CE22732 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29951 Hypothetical protein Y65B4A.9 [Caenorhabditis elegans] ref|NP_490767.1| Y65B4A.9 [Caenorhabditis elegans] 0.0
blast AAB42257 Hypothetical protein ZK354.2a [Caenorhabditis elegans] ref|NP_741395.1| ZK354.2a [Caenorhabditis elegans] 0.0
blast AAM97988 Hypothetical protein ZK354.2b [Caenorhabditis elegans] ref|NP_741394.1| ZK354.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.9E-16
Pfam IPR000719 EMBL-EBI Protein kinase 6.9E-16
Sequence
Target Sequence 
>C. ELEGANS:176114_S_AT
gtgctccacttgaaacgtcgcatcactgcaccgatggtcgcgtcggtttggagaaccact
ccggagaccactgctgggttctttgatcttctgaccatcatccgtgagcccaaggatgtc
gctgagtttgtggagtacgatcgtatcgctgatgggatccagaagctgtttgagaagtct
aagtcaaatacccaggagccaccagattgggattgtatgacggattacaagggtcctgga
taccagcaggtactgatgatcgcgccgcctgaggttgggctgaagccggagatggacttt
gggaagagcgatccgggagccgggggagaatctggagagcagccaaagaaggaagatgta
gacaagaagaaaaagaagaagaagaagtctaagaagaaggggaagagcaacaacaagacg
acgtcggcggaagagcaaaaaggagggaagtgcgctccaccgtcacgcgttagagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCCACTTGAAACGTCGCATCA 428 477 745 Antisense
TGCACCGATGGTCGCGTCGGTTTGG 101 577 771 Antisense
GTCGGTTTGGAGAACCACTCCGGAG 347 469 786 Antisense
TCCGTGAGCCCAAGGATGTCGCTGA 431 595 845 Antisense
AAATACCCAGGAGCCACCAGATTGG 494 115 930 Antisense
GATTACAAGGGTCCTGGATACCAGC 307 431 967 Antisense
CCAGCAGGTACTGATGATCGCGCCG 654 271 987 Antisense
CCGGGAGCCGGGGGAGAATCTGGAG 129 265 1057 Antisense
AGAGCAACAACAAGACGACGTCGGC 96 63 1148 Antisense
AAAGGAGGGAAGTGCGCTCCACCGT 571 119 1183 Antisense
CTCCACCGTCACGCGTTAGAGACGA 535 235 1199 Antisense
Sequence Source Affymetrix Proprietary Database