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[176113_at]

Description E01A2.6 /REP_DB=WormBase Gene ID /WP=CE24873 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 89      6grp_total > 98      4grp_total > 08      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1289
1 2 3 4 range
A 1205.8
(-3)
P 		1283.5
(-2.4)
P 		1400.4
(-1.6)
P 		2013.8
(3)
P 		808
B 1351.1
(-2.6)
P 		1289.9
(-3)
P 		1548.6
(-1.5)
P 		2305.1
(3)
P 		1015
C 1016.1
(-3)
P 		1266
(-1.2)
P 		1433.5
(0.1)
P 		1832
(3)
P 		816
avr 1191
(-3) 		1279.8
(-2.4) 		1460.8
(-1.1) 		2050.3
(3) 		859

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1975
1 2 3 4 5 6 range
A 977.7
(-1.9)
P 		1355.7
(-0.8)
P 		626
(-3)
P 		1189.3
(-1.3)
P 		2065.1
(1.4)
P 		2600.9
(3)
P 		1975
B 1082.7
(-2.1)
P 		1063.5
(-2.1)
P 		869.1
(-3)
P 		1419.8
(-0.6)
P 		2103.3
(2.5)
P 		2222.3
(3)
P 		1353
C 1571.1
(-0.3)
P 		883.7
(-3)
P 		1215.9
(-1.7)
P 		1165.8
(-1.9)
P 		1946.3
(1.2)
P 		2418.6
(3)
P 		1535
avr 1210.5
(-1.8) 		1101
(-2.2) 		903.7
(-3) 		1258.3
(-1.6) 		2038.2
(1.5) 		2413.9
(3) 		1510
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 439
(3)
P 		278.6
(-3)
P 		366.1
(0.3)
P 		294.8
(-2.4)
P 		160
B 430.8
(0.9)
P 		318.6
(-3)
P 		358.8
(-1.6)
P 		491.2
(3)
P 		173
C 336.4
(-2.1)
P 		364
(-1.3)
P 		499.6
(3)
P 		308.9
(-3)
P 		191
avr 402.1
(2.6) 		320.4
(-3) 		408.2
(3) 		365
(0) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 180.2
(-2.5)
P 		482.1
(1.2)
P 		136.3
(-3)
P 		301.6
(-1)
P 		623.2
(2.9)
P 		633.2
(3)
P 		497
B 376.7
(-1.5)
P 		354
(-1.7)
P 		211.1
(-3)
P 		376.1
(-1.5)
P 		854.5
(3)
P 		828.7
(2.8)
P 		643
C 582.3
(0.6)
P 		269.6
(-2.6)
P 		309.5
(-2.2)
P 		234.5
(-3)
P 		629.8
(1.1)
P 		809.6
(3)
P 		575
avr 379.7
(-1.2) 		368.6
(-1.3) 		219
(-3) 		304.1
(-2.1) 		702.5
(2.4) 		757.2
(3) 		538
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1982
Sequence Type Exemplar sequence
Representative Public ID E01A2.6 NCBI
Target Description E01A2.6 /REP_DB=WormBase Gene ID /WP=CE24873 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058903 NCBI Caenorhabditis elegans E01A2.6 (E01A2.6) mRNA, complete cds. 11/11 None
SNAP00000008539 ENSEMBL cdna:SNAP chromosome:CEL140:I:4137798:4138946:-1 11/11 None
GENEFINDER00000008594 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4137798:4138946:-1 11/11 None
E01A2.6 ENSEMBL cdna:known chromosome:CEL140:I:4137214:4138953:-1 gene:E01A2.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4137797-4138946(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01A2.6
Entrez Gene 171997 Entrez gene
SwissProt Q966L3 EMBL-EBI
WormBase CE24873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85463 Hypothetical protein E01A2.6 [Caenorhabditis elegans] ref|NP_491304.1| E01A2.6 [Caenorhabditis elegans] 1.0E-111
blast CAE66716 Hypothetical protein CBG12062 [Caenorhabditis briggsae] 5.0E-96
blast XP_216366 PREDICTED: similar to hypothetical protein FLJ10342 [Rattus norvegicus] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:176113_AT
tgccgtcaaccagcacatttgctcagaagttcaaagaacaggaggaaagcgtcttccaag
cagctacacttatgactcgtttgtctcgaaatcagctcaaaacatatctcagttcggaag
tgaaaaacctgcgcaagcgaaaagccattccacgcagcaatgactttgatgatgatggag
atcaaagaggagacggatgcagctcaaactactcaaaagcttacagagctccttcttctc
ccaagtctggatcggattccgagggtgaagcaccatcaacatctgtgactgatcgttcca
gcgccaagagggaatttacaatggcaaatgttcaaatgatatgcgaacgtctgctcaaac
aacaagaaatccgtctgagaaatgagttcgaaatggttctgactaagaagcttgatgagc
aacaccagcaatacgtccaatttgctgccgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGTCAACCAGCACATTTGCTCA 126 585 158 Antisense
GAAAGCGTCTTCCAAGCAGCTACAC 563 359 202 Antisense
AGCAGCTACACTTATGACTCGTTTG 602 75 216 Antisense
GACTCGTTTGTCTCGAAATCAGCTC 30 373 231 Antisense
AAGCCATTCCACGCAGCAATGACTT 429 149 299 Antisense
GACGGATGCAGCTCAAACTACTCAA 311 377 349 Antisense
AAAGCTTACAGAGCTCCTTCTTCTC 87 125 373 Antisense
CTTCTTCTCCCAAGTCTGGATCGGA 457 221 389 Antisense
CATCTGTGACTGATCGTTCCAGCGC 294 213 437 Antisense
GATATGCGAACGTCTGCTCAAACAA 558 329 495 Antisense
CAATACGTCCAATTTGCTGCCGAGC 530 179 586 Antisense
Sequence Source Affymetrix Proprietary Database