[Home] | [Total List]

[176111_at] chloride channel

Description Y105E8B.Y /REP_DB=WormBase Gene ID /WP=CE26392 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 06      4grp_total > 28      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 107.2
(-3)
A 		161.1
(-0.1)
A 		141.1
(-1.2)
A 		217.4
(3)
A 		110
B 175.1
(3)
M 		148
(1)
A 		95.5
(-3)
A 		108.5
(-2)
A 		80
C 138.3
(-1.1)
A 		157
(-0.1)
A 		104.5
(-3)
A 		212.5
(3)
M 		108
avr 140.2
(-0.6) 		155.4
(0.8) 		113.7
(-3) 		179.5
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 193.7
(3)
A 		101.8
(-1.6)
A 		82.4
(-2.6)
A 		107.9
(-1.3)
A 		107.5
(-1.3)
A 		73.4
(-3)
A 		120
B 100.5
(-1.4)
A 		108.4
(-0.7)
A 		153.4
(3)
P 		80.5
(-3)
A 		87.5
(-2.4)
A 		82.1
(-2.9)
A 		73
C 99.4
(0.8)
A 		112.2
(3)
A 		84.5
(-1.8)
A 		79.2
(-2.7)
A 		90.8
(-0.7)
A 		77.7
(-3)
A 		35
avr 131.2
(3) 		107.5
(0.3) 		106.8
(0.3) 		89.2
(-1.7) 		95.3
(-1) 		77.7
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 39
(3)
A 		35
(-0.3)
A 		36.9
(1.3)
A 		31.8
(-3)
A 		7
B 55.8
(3)
M 		36.6
(-0.4)
A 		22.1
(-3)
A 		23.1
(-2.8)
A 		34
C 45.8
(3)
A 		45.1
(2.6)
A 		36.4
(-2.6)
A 		35.8
(-3)
M 		10
avr 46.9
(3) 		38.9
(0.1) 		31.8
(-2.4) 		30.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 35.7
(2.8)
A 		36.2
(3)
A 		17.9
(-3)
A 		27.4
(0.1)
A 		32.4
(1.8)
A 		17.9
(-3)
A 		18
B 35
(2.2)
A 		36.1
(2.6)
A 		37.2
(3)
P 		21.3
(-3)
A 		35.6
(2.4)
A 		30.6
(0.5)
A 		16
C 36.8
(3)
A 		34.2
(2.3)
A 		21.5
(-1.4)
A 		15.9
(-3)
A 		29.4
(0.9)
A 		26
(-0.1)
A 		21
avr 35.8
(3) 		35.5
(2.9) 		25.5
(-1.3) 		21.5
(-3) 		32.5
(1.6) 		24.8
(-1.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18800
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.Y NCBI
Target Description Y105E8B.Y /REP_DB=WormBase Gene ID /WP=CE26392 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170954(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170954 NCBI Caenorhabditis elegans EXCretory canal abnormal family member (exc-4) (exc-4) mRNA, complete cds. 9/11 None
GENEFINDER00000013490 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14520781:14531961:-1 11/11 None
Y105E8A.22 ENSEMBL cdna:known chromosome:CEL140:I:14520781:14526833:-1 gene:Y105E8A.22 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013350 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14520711-14531892(-) 81.49 99.34
Public Domain and Genome References
Gene Title chloride channel
Gene Symbol exc-4
Ensembl Y105E8A.22
Entrez Gene 173314 Entrez gene
SwissProt Q8WQA4 EMBL-EBI
WormBase CE36222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21669 Hypothetical protein Y105E8A.22 [Caenorhabditis elegans] ref|NP_740950.2| EXCretory canal abnormal family member (exc-4) [Caenorhabditis elegans] gb|AAQ75554.1| EXC-4 [Caenorhabditis elegans] sp|Q8WQA4|EXC4_CAEEL Chloride intracellular channel exc-4 (Excretory canal abnormal protein 4) 1.0E-167
blast CAE72597 Hypothetical protein CBG19786 [Caenorhabditis briggsae] 1.0E-162
blast CAD21669 Hypothetical protein Y105E8A.22 [Caenorhabditis elegans] ref|NP_740950.2| EXCretory canal abnormal family member (exc-4) [Caenorhabditis elegans] gb|AAQ75554.1| EXC-4 [Caenorhabditis elegans] sp|Q8WQA4|EXC4_CAEEL Chloride intracellular channel exc-4 (Excretory canal abnormal protein 4) 1.0E-93
blast CAE72597 Hypothetical protein CBG19786 [Caenorhabditis briggsae] 3.0E-90
blast XP_392027 PREDICTED: similar to GA10697-PA [Apis mellifera] 3.0E-43
blast XP_392027 PREDICTED: similar to GA10697-PA [Apis mellifera] 6.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013490 1 92-114
Sequence
Target Sequence 
>C. ELEGANS:176111_AT
ttggcaaaccggcactttgcccaatttcccaatttccccaattttttgtgataaatattg
tttatcgcatcttgtcaacataattccatcaaaaattgcccccattttattgcagttgct
atccgagagaaaatctcgatatctacttggaaacagtatgactgaatatgactgtgaact
gatgccacgtcttcatcatattcgaattattggattgtcacttcttggattcgatattcc
acataatttcactcatctctgggcttatatcctcactgcataccgtacagcagcatttat
tgagagttgtcccgccgatcaggacattattcatcactataaagaacaaatgaatctgtt
cacaaatcaacgtgaaaccctccaatcgccaacaaaaacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAAACCGGCACTTTGCCCAAT 4 705 1059 Antisense
AAATTGCCCCCATTTTATTGCAGTT 496 113 1151 Antisense
ATGACTGTGAACTGATGCCACGTCT 204 45 1226 Antisense
ATGCCACGTCTTCATCATATTCGAA 459 41 1240 Antisense
GGATTGTCACTTCTTGGATTCGATA 296 509 1270 Antisense
ATTCCACATAATTTCACTCATCTCT 503 7 1294 Antisense
TCACTCATCTCTGGGCTTATATCCT 63 627 1307 Antisense
TATATCCTCACTGCATACCGTACAG 51 661 1324 Antisense
GCATTTATTGAGAGTTGTCCCGCCG 327 307 1351 Antisense
CCCGCCGATCAGGACATTATTCATC 503 261 1369 Antisense
CCCTCCAATCGCCAACAAAAACGCA 188 259 1436 Antisense
Sequence Source Affymetrix Proprietary Database