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[176110_at]

Description Y65B4A.D /REP_DB=WormBase Gene ID /WP=CE22730 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 40      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 8.2
(1.1)
A 		6.3
(-3)
A 		9.1
(3)
A 		7.1
(-1.3)
A 		3
B 14.3
(3)
A 		5.3
(-3)
A 		6.5
(-2.2)
A 		11.9
(1.4)
A 		9
C 4.3
(-3)
A 		5.9
(-2.8)
A 		4.8
(-3)
A 		67.1
(3)
A 		63
avr 8.9
(-2.2) 		5.8
(-3) 		6.8
(-2.7) 		28.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 16.1
(1.9)
A 		4.4
(-2.8)
A 		18.7
(3)
A 		7.3
(-1.6)
A 		15.1
(1.5)
A 		3.9
(-3)
A 		15
B 20.1
(-0.8)
A 		43.2
(2.9)
A 		33.7
(1.4)
A 		43.8
(3)
A 		16.8
(-1.4)
A 		6.6
(-3)
A 		37
C 3.6
(-2.8)
A 		15.5
(-0.5)
A 		7
(-2.1)
A 		33.3
(3)
A 		2.6
(-3)
A 		4
(-2.7)
A 		31
avr 13.3
(-0.8) 		21
(1.2) 		19.8
(0.9) 		28.1
(3) 		11.5
(-1.3) 		4.8
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3
(3)
A 		1.4
(-1.8)
A 		2.4
(1.2)
A 		1
(-3)
A 		2
B 4.6
(3)
A 		1.3
(-3)
A 		1.5
(-2.6)
A 		2.5
(-0.8)
A 		3
C 1.4
(-3)
A 		1.7
(-2.8)
A 		1.7
(-2.8)
A 		11.3
(3)
A 		10
avr 3
(-0.4) 		1.5
(-3) 		1.9
(-2.3) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3
(0.4)
A 		1.6
(-1.9)
A 		4.1
(2.2)
A 		1.8
(-1.5)
A 		4.6
(3)
A 		0.9
(-3)
A 		4
B 7
(-0.7)
A 		14.4
(3)
A 		8.2
(-0.1)
A 		11.6
(1.6)
A 		6.8
(-0.8)
A 		2.5
(-3)
A 		12
C 1.3
(-2.5)
A 		4.7
(1)
A 		1.8
(-2)
A 		6.7
(3)
A 		0.8
(-3)
A 		1.3
(-2.5)
A 		6
avr 3.8
(-0.5) 		6.9
(3) 		4.7
(0.5) 		6.7
(2.8) 		4.1
(-0.2) 		1.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18835
Sequence Type Exemplar sequence
Representative Public ID Y65B4A.D NCBI
Target Description Y65B4A.D /REP_DB=WormBase Gene ID /WP=CE22730 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y65B4A.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y65B4A.D Y65B4A.D /REP_DB=WormBase Gene ID /WP=CE22730 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058361 11/11 Negative Strand Matching Probes A 
SNAP00000032533 11/11 Negative Strand Matching Probes None
GENEFINDER00000032549 11/11 Negative Strand Matching Probes None
Y65B4A.3 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:637486-637675(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176110_AT
atggctcggagcctctggaagttgaactgtgccccattccgccgccaacagatcctccaa
ttccttctcaacgtccgagacatccgtgttggaaagctggccggacagcatattcgagat
ttcttcctgatattccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCGGAGCCTCTGGAAGTTGA 469 51 13 Antisense
GCTCGGAGCCTCTGGAAGTTGAACT 485 299 16 Antisense
GCCTCTGGAAGTTGAACTGTGCCCC 663 281 23 Antisense
TGGAAGTTGAACTGTGCCCCATTCC 265 545 28 Antisense
TTCTCAACGTCCGAGACATCCGTGT 159 691 77 Antisense
AACGTCCGAGACATCCGTGTTGGAA 484 139 82 Antisense
GACATCCGTGTTGGAAAGCTGGCCG 564 369 91 Antisense
CCGTGTTGGAAAGCTGGCCGGACAG 521 259 96 Antisense
GAAAGCTGGCCGGACAGCATATTCG 351 359 104 Antisense
GGCCGGACAGCATATTCGAGATTTC 352 543 111 Antisense
TCGAGATTTCTTCCTGATATTCCGC 398 603 126 Antisense
Sequence Source Affymetrix Proprietary Database