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[176106_at]

Description ZK688.1 /REP_DB=WormBase Gene ID /WP=CE00459 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 6.8
(-3)
A 		8
(-2.9)
A 		9.3
(-2.8)
A 		70.7
(3)
A 		64
B 8.6
(-2.4)
A 		16.9
(3)
A 		12.6
(0.2)
A 		7.6
(-3)
A 		9
C 7.7
(-2.9)
A 		21.9
(0.4)
A 		7.3
(-3)
A 		33
(3)
A 		26
avr 7.7
(-3) 		15.6
(-1.4) 		9.7
(-2.6) 		37.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.9
(3)
A 		7
(0.1)
A 		5.9
(-0.9)
A 		3.8
(-3)
A 		5.2
(-1.6)
A 		4.4
(-2.4)
A 		6
B 12.4
(-1.1)
A 		1.2
(-3)
A 		37.4
(3)
A 		29.6
(1.7)
A 		3.2
(-2.7)
A 		5.6
(-2.3)
A 		36
C 4.9
(-2.2)
A 		6.4
(-1.7)
A 		2.5
(-3)
A 		20.5
(3)
A 		6.1
(-1.8)
A 		9.9
(-0.5)
A 		18
avr 9.1
(-1) 		4.9
(-3) 		15.3
(1.8) 		18
(3) 		4.8
(-3) 		6.6
(-2.2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-2.4)
A 		1.7
(-3)
A 		2.4
(-2.5)
A 		10.3
(3)
A 		9
B 2.7
(-0.5)
A 		4.2
(3)
A 		2.9
(-0)
A 		1.6
(-3)
A 		3
C 2.5
(-3)
A 		6.3
(3)
A 		2.5
(-3)
A 		5.6
(1.9)
A 		4
avr 2.6
(-3) 		4.1
(-0.2) 		2.6
(-3) 		5.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.8
(0.2)
A 		2.5
(3)
A 		1.3
(-1.8)
A 		1
(-3)
A 		1.6
(-0.6)
A 		1.1
(-2.6)
A 		2
B 4.3
(-0.3)
A 		0.4
(-3)
A 		9.1
(3)
A 		7.8
(2.1)
A 		1.3
(-2.4)
A 		2.1
(-1.8)
A 		9
C 1.8
(-0.9)
A 		2
(-0.6)
A 		0.6
(-3)
A 		4.1
(3)
A 		2
(-0.6)
A 		3.3
(1.6)
A 		4
avr 2.6
(-0.8) 		1.6
(-3) 		3.7
(1.7) 		4.3
(3) 		1.6
(-3) 		2.2
(-1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7294
Sequence Type Exemplar sequence
Representative Public ID ZK688.1 NCBI
Target Description ZK688.1 /REP_DB=WormBase Gene ID /WP=CE00459 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066319 NCBI Caenorhabditis elegans ZK688.1 (ZK688.1) mRNA, complete cds. 11/11 None
GENEFINDER00000043644 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7909568:7910682:1 11/11 None
SNAP00000043631 ENSEMBL cdna:SNAP chromosome:CEL140:III:7909621:7910682:1 11/11 None
ZK688.1 ENSEMBL cdna:known chromosome:CEL140:III:7909568:7910682:1 gene:ZK688.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7909618-7910680(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK688.1
Entrez Gene 191405 Entrez gene
SwissProt P34671 EMBL-EBI
WormBase CE29165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28226 Hypothetical protein ZK688.1 [Caenorhabditis elegans] ref|NP_498720.1| ZK688.1 [Caenorhabditis elegans] sp|P34671|YO21_CAEEL Hypothetical protein ZK688.1 in chromosome III 1.0E-78
blast AAA28226 Hypothetical protein ZK688.1 [Caenorhabditis elegans] ref|NP_498720.1| ZK688.1 [Caenorhabditis elegans] sp|P34671|YO21_CAEEL Hypothetical protein ZK688.1 in chromosome III 3.0E-58
blast CAE66894 Hypothetical protein CBG12275 [Caenorhabditis briggsae] 3.0E-41
blast CAE66894 Hypothetical protein CBG12275 [Caenorhabditis briggsae] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:176106_AT
cacattcaccgagtccttggacaaaaacaactcacacaaccgaacaatttaccacaagat
tattgaaatcgagaagcgaattgaaaggattgaagaaaaagagaataatgttctaccaga
gccatcaaaacctaacaatcctgttgtgaatccacctgtgagccctattcaaccgaaaac
tgacccagaacaatccgaaaatgattgcttgtcatgtccttcgctaattccaattttgga
tagttgtgaaaactgtgttagtgtcaagatatcacctccatttgaatattattcatgcaa
agcagttgaacttaaatgtggagatggtgcaaagaaattgaagatttcggatggattcca
gaaaaatattcacgagaataatttcaagttgatttgtaaaaatggaagttggatgatgat
ggcaaatcacgcggagcataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATTCACCGAGTCCTTGGACAAA 146 197 21 Antisense
CTCACACAACCGAACAATTTACCAC 247 227 51 Antisense
GAATAATGTTCTACCAGAGCCATCA 354 327 123 Antisense
AGAGCCATCAAAACCTAACAATCCT 212 71 138 Antisense
CTGTTGTGAATCCACCTGTGAGCCC 364 239 161 Antisense
CTGTGAGCCCTATTCAACCGAAAAC 179 241 176 Antisense
GAAAACTGACCCAGAACAATCCGAA 504 353 195 Antisense
AATGATTGCTTGTCATGTCCTTCGC 177 165 220 Antisense
TGTCCTTCGCTAATTCCAATTTTGG 301 557 235 Antisense
AGTGTCAAGATATCACCTCCATTTG 685 59 280 Antisense
TGATGGCAAATCACGCGGAGCATAA 83 567 437 Antisense
Sequence Source Affymetrix Proprietary Database