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[176104_at]

Description Y41D4B.K /REP_DB=WormBase Gene ID /WP=CE21858 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 30      4grp_total > 62      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 187.6
(1.4)
P 		133.1
(-0)
M 		249.4
(3)
P 		18.1
(-3)
A 		231
B 193.7
(3)
P 		122.8
(0.4)
A 		163.6
(1.9)
P 		32.1
(-3)
A 		162
C 217.6
(3)
P 		109.9
(-1.7)
A 		173.8
(1.1)
P 		79.1
(-3)
A 		139
avr 199.6
(3) 		121.9
(0) 		195.6
(2.8) 		43.1
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 58.7
(-3)
A 		140.4
(1.4)
P 		133
(1)
P 		170.5
(3)
P 		61.3
(-2.9)
A 		60.4
(-2.9)
A 		112
B 106.9
(0.9)
A 		95
(-0.8)
P 		121.7
(3)
P 		90.1
(-1.5)
P 		101
(0.1)
P 		79.5
(-3)
P 		42
C 108
(-1.6)
A 		158.1
(1.8)
P 		176.8
(3)
P 		161.1
(2)
P 		96.9
(-2.3)
P 		86.6
(-3)
P 		90
avr 91.2
(-1.6) 		131.2
(1.9) 		143.8
(3) 		140.6
(2.7) 		86.4
(-2) 		75.5
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 68.3
(3)
P 		28.9
(-0.6)
M 		65.2
(2.7)
P 		2.7
(-3)
A 		66
B 61.8
(3)
P 		30.3
(-0.4)
A 		37.9
(0.4)
P 		6.8
(-3)
A 		55
C 72
(3)
P 		31.6
(-1.1)
A 		60.6
(1.8)
P 		13.3
(-3)
A 		59
avr 67.4
(3) 		30.3
(-0.7) 		54.6
(1.7) 		7.6
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 10.8
(-3)
A 		49.9
(3)
P 		29
(-0.2)
P 		43.2
(2)
P 		18.5
(-1.8)
A 		14.7
(-2.4)
A 		39
B 37.2
(1.7)
A 		31.6
(-0.3)
P 		29.5
(-1)
P 		23.9
(-3)
P 		41
(3)
P 		29.6
(-1)
P 		17
C 40
(0.4)
A 		48.2
(3)
P 		45
(2)
P 		32.4
(-1.9)
P 		31.4
(-2.3)
P 		29
(-3)
P 		19
avr 29.3
(-1.4) 		43.2
(3) 		34.5
(0.2) 		33.2
(-0.2) 		30.3
(-1.1) 		24.4
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19241
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.K NCBI
Target Description Y41D4B.K /REP_DB=WormBase Gene ID /WP=CE21858 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067698 NCBI Caenorhabditis elegans Y41D4B.17 (Y41D4B.17) mRNA, complete cds. 11/11 None
SNAP00000005507 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1560232:1561731:1 11/11 None
GENEFINDER00000005539 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1560232:1561872:1 11/11 None
Y41D4B.17 ENSEMBL cdna:known chromosome:CEL140:IV:1560228:1561779:1 gene:Y41D4B.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1560237-1561737(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.17
Entrez Gene 176964 Entrez gene
SwissProt Q95Y18 EMBL-EBI
WormBase CE21858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68467 Hypothetical protein Y41D4B.17 [Caenorhabditis elegans] ref|NP_500099.1| Y41D4B.17 [Caenorhabditis elegans] 0.0
blast AAK68468 Hypothetical protein Y41D4B.18 [Caenorhabditis elegans] ref|NP_500098.1| Y41D4B.18 [Caenorhabditis elegans] 1.0E-95
blast AAK68468 Hypothetical protein Y41D4B.18 [Caenorhabditis elegans] ref|NP_500098.1| Y41D4B.18 [Caenorhabditis elegans] 1.0E-92
blast AAC04390 Hypothetical protein C34H4.1 [Caenorhabditis elegans] ref|NP_500097.1| C34H4.1 [Caenorhabditis elegans] 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.5E-77
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 8.3E-77
Sequence
Target Sequence 
>C. ELEGANS:176104_AT
aatacttatttcttcgacaccatcgagccgatgcaatactccttgcgtgccttttacatt
cgagcaatcggttctattgcattcaaagtctcgaaccagtggatagatccaagcaactac
gaaaccaccgccgcgacgacaaccggattcttgatgagccaagaggtttctactccgagc
ttgaaagtggatttcatgtttaattccggccataatggaatcgtcggacttcttgtgagt
acagcgctgttcgcggacgccaatgttacattgtgcagcaatttggagtgcgacacattg
cgaatgccccagacaccagcgataacttctcgcgtcttcgagtggaatacgaatgcgaca
agcttgtctgtgacaccaagtcaaggtgtctattttattcaatacttccggattgacctg
aacgagcaaattgtcggcttgacatcgtcttctgcagctccaacaaattctccaacaacc
tcgcaatcagtaactgccggtcaatcaacggcttctaccactcaatatgttgaaacaacc
actaagctgggcctaacagcctcgattgctgtctctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTTATTTCTTCGACACCATCG 242 167 601 Antisense
CTTGCGTGCCTTTTACATTCGAGCA 302 219 642 Antisense
GAGCCAAGAGGTTTCTACTCCGAGC 198 385 756 Antisense
GTCGGACTTCTTGTGAGTACAGCGC 274 471 823 Antisense
GCTGTTCGCGGACGCCAATGTTACA 299 295 846 Antisense
GGAGTGCGACACATTGCGAATGCCC 700 515 885 Antisense
GACACCAGCGATAACTTCTCGCGTC 80 369 912 Antisense
AATTGTCGGCTTGACATCGTCTTCT 498 179 1029 Antisense
ACAACCTCGCAATCAGTAACTGCCG 355 113 1075 Antisense
CGGCTTCTACCACTCAATATGTTGA 221 243 1109 Antisense
TAACAGCCTCGATTGCTGTCTCTAC 593 639 1154 Antisense
Sequence Source Affymetrix Proprietary Database