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[176102_at]

Description Y41D4B.G /REP_DB=WormBase Gene ID /WP=CE26090 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 57      4grp_total > 38      6grp_cgc > 29      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.9
(-1.6)
A 		4
(-1.2)
A 		3.6
(-3)
A 		4.9
(3)
A 		1
B 10.4
(3)
A 		7.8
(0.5)
A 		6.3
(-1)
A 		4.2
(-3)
A 		6
C 8.6
(3)
A 		5.1
(-0.6)
A 		2.7
(-3)
A 		6.6
(1)
A 		6
avr 7.6
(3) 		5.6
(-0.5) 		4.2
(-3) 		5.2
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4
(-2.1)
A 		20.5
(2.7)
A 		0.9
(-3)
A 		4.6
(-1.9)
A 		7.2
(-1.2)
A 		21.6
(3)
A 		21
B 2.8
(-2)
A 		5.2
(3)
A 		2.3
(-3)
A 		4
(0.5)
A 		2.6
(-2.4)
A 		3.3
(-0.9)
A 		3
C 7.6
(-0.5)
A 		3.2
(-2.4)
A 		1.9
(-3)
A 		2
(-3)
A 		3.3
(-2.4)
A 		15.7
(3)
A 		14
avr 4.8
(-1.4) 		9.6
(1) 		1.7
(-3) 		3.5
(-2.1) 		4.4
(-1.6) 		13.5
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(3)
A 		0.9
(-1.3)
A 		0.9
(-1.3)
A 		0.7
(-3)
A 		1
B 3.3
(3)
A 		1.9
(-0.5)
A 		1.5
(-1.5)
A 		0.9
(-3)
A 		2
C 2.8
(3)
A 		1.5
(-1.3)
A 		1
(-3)
A 		1.1
(-2.7)
A 		2
avr 2.5
(3) 		1.4
(-1.1) 		1.1
(-2.3) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-2.6)
A 		7.3
(3)
A 		0.2
(-3)
A 		1.2
(-2.2)
A 		2.2
(-1.3)
A 		5.2
(1.2)
A 		7
B 1
(-0.8)
A 		1.7
(3)
A 		0.6
(-3)
A 		1.1
(-0.3)
A 		1
(-0.8)
A 		1.2
(0.3)
A 		1
C 2.8
(-0.1)
A 		1
(-2.3)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		1.1
(-2.1)
A 		5.3
(3)
A 		5
avr 1.5
(-1.1) 		3.3
(2) 		0.4
(-3) 		0.9
(-2.1) 		1.4
(-1.3) 		3.9
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19269
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.G NCBI
Target Description Y41D4B.G /REP_DB=WormBase Gene ID /WP=CE26090 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067701
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005527 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1580279:1585872:-1 None
NM_067701 NCBI Caenorhabditis elegans Nuclear Pore complex Protein family member (npp-8) (npp-8) mRNA, complete cds. A 
SNAP00000005510 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1568312:1585872:-1 None
Y41D4B.19b ENSEMBL cdna:known chromosome:CEL140:IV:1567919:1595822:-1 gene:Y41D4B.19 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1583621-1585878(-) 68.48 91.21
Public Domain and Genome References
Ensembl Y41D4B.19
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68470 Nuclear pore complex protein protein 8, isoform b [Caenorhabditis elegans] ref|NP_500102.3| Nuclear Pore complex Protein family member (npp-8) [Caenorhabditis elegans] 0.0
blast AAK68469 Nuclear pore complex protein protein 8, isoform a [Caenorhabditis elegans] ref|NP_500104.1| Nuclear Pore complex Protein family member (npp-8) [Caenorhabditis elegans] 1.0E-176
blast CAE67963 Hypothetical protein CBG13567 [Caenorhabditis briggsae] 1.0E-154
blast NP_956450 nucleoporin 155 [Danio rerio] gb|AAH45339.1| Nucleoporin 155 [Danio rerio] 6.0E-67
blast AAH47162 Nup155-prov protein [Xenopus laevis] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR004870 EMBL-EBI Non-repetitive/WGA-negative nucleoporin 2.9E-38
Pfam IPR004870 EMBL-EBI Non-repetitive/WGA-negative nucleoporin 3.5E-8
Pfam IPR004870 EMBL-EBI Non-repetitive/WGA-negative nucleoporin 6.1E-10
Pfam IPR004870 EMBL-EBI Non-repetitive/WGA-negative nucleoporin 4.9E-39
Pfam IPR004870 EMBL-EBI Non-repetitive/WGA-negative nucleoporin 3.5E-8
Sequence
Target Sequence 
>C. ELEGANS:176102_AT
tagtctgaaagaagcgccggaaattgttgaaaatgagcagcaacgaatgctcgatcaatc
gacgacgacgtcatggtcaccaaatgatagtagtatggctgaatggaggcatcgaatgaa
gacaccgttactctcatcgactccgagaactgatggaagaaatggaaatgctggaggagc
tccgccgcaggctcattttagttctccgttttctccgatgtgtaagccatggccgagggg
caaacttaaattagttttttttcaacgacactgcaactttttcctcgcgagggacgagga
aaagtggtttctaggccatggccgtggggccgacaagtttcagcggccatttatcttgct
ttgttttccgcctgttttctttcgtttttcacagctttttcccatgctaaaacaatttcc
aagtaaaaaaattatgtattcagtgggcaaacagcgcggtctcgttatgaaaatcaggca
atttcagcatttaagcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTCTGAAAGAAGCGCCGGAAATT 345 615 462 Antisense
AGCAACGAATGCTCGATCAATCGAC 71 77 500 Antisense
TCGACGACGACGTCATGGTCACCAA 375 601 520 Antisense
ATGAAGACACCGTTACTCTCATCGA 489 43 577 Antisense
GGAAATGCTGGAGGAGCTCCGCCGC 520 527 625 Antisense
CAGGCTCATTTTAGTTCTCCGTTTT 668 207 649 Antisense
TCCGTTTTCTCCGATGTGTAAGCCA 16 595 666 Antisense
TCTCCGATGTGTAAGCCATGGCCGA 541 607 673 Antisense
TTTTTTCAACGACACTGCAACTTTT 512 673 718 Antisense
ATTCAGTGGGCAAACAGCGCGGTCT 217 9 899 Antisense
CAGGCAATTTCAGCATTTAAGCATC 351 209 936 Antisense
Sequence Source Affymetrix Proprietary Database